Gene Svir_23550 details

Gene Information

• Locus tag: Svir_23550
• ID: 8387679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Saccharomonospora viridis DSM 43017
• Kingdom: Bacteria
• Replicon accession: NC_013159
• Strand: -
• Start bp: 2547190
• End bp: 2547618
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644976406
• Product: predicted nucleic acid-binding protein, contains PIN domain protein
• Protein accession: YP_003134188
• Protein GI: 257056356
• COG category: [R] General function prediction only
• COG ID: [COG1487] Predicted nucleic acid-binding protein, contains PIN domain

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 0.46968
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 0.640927
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGATCGTTC TCGACACGAA CGTCGTGTCG GAGCTGCTGC GGCGAGCGCC GGACGCGGGA 
GTGGTCGCCT GGGTGGACCG GCTTCCGGTG GAGAGCGTGT TCATCACGGC CGTGACCGCC 
GCCGAACTGC GTTACGGCGT CGCCCGGCTC CCCGACGGCC GGCGGAAGCA GGTGCTGGAC 
GTCAAGATCG GCGAACTGCT CACCGAGGAC TTCGAGGATC GGGTCCTGCC GTTCGACACC 
GGTTCCGCGG CGCACTACGC CACCATCGTC GCGGCACGTG AACGGGCGGG AAGTCCGATC 
AGCGCGGCCG ATGCGCAGAT CGCGGCGATC TGTCGGTACT ACCGCGCTCG CCTGGCCACC 
CGCAACGTGG GCGATTTCGT CGGTACCGGC GTGGAACTGA TCAACCCATG GGAGGCCCCG 
GCGGAGTAG 

 

Protein sequence

MIVLDTNVVS ELLRRAPDAG VVAWVDRLPV ESVFITAVTA AELRYGVARL PDGRRKQVLD 
VKIGELLTED FEDRVLPFDT GSAAHYATIV AARERAGSPI SAADAQIAAI CRYYRARLAT 
RNVGDFVGTG VELINPWEAP AE