| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_23510 |
|---|
| Symbol | |
|---|
| ID | 8387675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2540598 |
|---|
| End bp | 2544995 |
|---|
| Gene Length | 4398 bp |
|---|
| Protein Length | 1465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644976402 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003134184 |
|---|
| Protein GI | 257056352 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000499426 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.846477 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACA ACAACCCACT GGTCGCGGAG GCACCGCAGG ACGGTGCCGG TCCGGGACCG
TGGACCTCCG GGAACAACGA CCACGGTTGG GTCACCGGGA TCGGCATCGC CGAATCGGCC
ATCGACACGT TCAACGGCAT CAAGGACGGC AACTGGATCG ACATCGGGCT GGGCACGGTC
GGACTGGTGG CCGAGGGGGC CGCCGCGGCG ATCGACCCGT TCGGCTGGCT GATGTCCTCG
GTGGCGTCGT TTTTGATGGA GCACATCCAG CCGCTCAAGG ACATGCTCGA CTCCGTGTGC
GGTGACCCAC CGGTGATCCA GTCGTATTCG GAGACGTGGG CCAACGTCGC CGCGCACCTG
GAGGAAACCC AGGTGACGTT CGCCAACGCG GTGAAGAACA GCACCACCGG CTGGACGGGC
CCGGCCGCTG ACGCCTACCG GGAATCCTGC AAGGAACAGG AGGAGGCTCT CGCCGGGGCC
GCCACCACGG CGAGTGGGAT CAGCACGGTC GTGATGCTCT TCGGCGAGGT CGTGGCGTTC
GTCCGGGAAA CGGTGCGCGA CCTCATCGCC GACCTGGTGG GCAAGCTGAT CTCCTGGGTG
CTGGAGACGG TGTTCACCCT GGGCTTTGGC ACACCGGTCG TGGTGGCCCA GGCCGTCACG
GCGATCTCCA AGTGGGGCAC CAAGATCGCC GACTTCCTCA AGCGGCTCAC CCGGACCATC
AGCCAGGTGT CGCCGCTGCT GGGCCGGTTG ATCGAGGTCT TCGGCTCCGT CATGAAGGTG
TGCGGGAAGA TCCTGGGCAA GGTCACCGGC CTGGACGTCA TCAGGAAGAA GAACATCATC
GATGGCGGTT TCTTCCAACG TCCCGGTAGG AACAGCGACG TCGATCTCGA CGGCGGTGGC
TCCGGAAACG GCGGCTCCAG CGGGGGTTCC GGTGGGGGTG CGAACGGCAA TGGTGGTTCG
AGCGGTGGCG GGGACTCCGG TTCGGGCGGT GGCGCGGACG GTGATGGTGG TTCCGGCTCG
AACCGCGGTT CGGATGGGGG AACCGGCGGT GATTCCGGTT CGAGTCCGAA CGGCTCGAGT
AGTGATACAG GGCCGGACTC GAGTACGACA CCGAGGTCGA ACCCCTCGAA CACTTCGGAC
TCGACGAATA CACCGTCGCG TTCGGACTCA AGAACCGGAG GAGGCGAGAG CCCTTCCGGT
GACTCCCCGC CGAGGCGATC CACCTCGTCG CCGGGAGGTG GCTCCTCCGA TGGACCGGTC
TCCACGAGTA CGGGTGGCGG CGGTGGTACG TCGACGACTC CACGCGTCGA CACGTCGCAC
TCGACCGGGA CCGGTGGTTC GTCCAGCACC GGGAGCCCTG CCGCCGGTCA CCACTTCGGG
CCCTCCGGTT CGACGTCGTC CCATTCCCCG TCGCCGGATT CGTCGCCTCA CGGATCCGGC
GGCACTCAGT CGAGTCCCTC GCCGCATTCA ACGGCCGGTG ATGGTCCCGG TACGACGCGG
TCGAATCCCG ATACCGCTTC GTCGAGCAAC GGAAACACCG ACAGTCCGCG CGGAAACACA
CAGACTCGTC CGGAGAATCA ACCATCCACT TCGCACGATT CTCCCAGCCA GGCCACCCCG
CGGCAGGATA GTCCATACGC GAACGACTCC GGACGGTCGC CACAGAGTCC GCCACAGGGT
CCGTCCCCAG GAACTTCGTC GGGGCCCTCA TCGGGACCGT CGCCGACTCA TCCGGATTCG
CCTTTCTCCC GACCGAACAC GGGCACTCAT GCGGACTCGA CGACGGCGAG TGGTCTTTCG
TCACCGACCT CGCCGCACGC AACGCCGCCA CGCACGGACT CCGGTGGTTT CTCGCCACCT
CCACAACGCG GGCCCGAGGG TGGTTCGACA CCCTCCACGC CACACGCCCA GCAACCGATG
GGGACGGGTC CGGCGGCGAC GCCGAACTCC GGTGGGACGA CTCCCGGCGG ATCGAGCGGC
ACGTCCCCGG GCGGCCGTCC CCACGGTCCA CAGGGCTGGA CCGGCACACC GGGGTCACCG
GGAGCGCGAC CGCACTCGGA GACACCCGCG ACACCGACGA CACCGGCGAC ACAGCCTCGC
CCCGGCGGAC CCCCGCAACC GTCGACGTCT CCGCAAAGCC ACGCCCCGCA CACGCCCACA
CCGCAGCGCC CCGGCCCGCC GCAGGGCACG ACGCATGGAC CCGGTGGGCA GTATGGGCCC
GGACCGCATG CACAGCCCCA CATGCCACCC GCGGTGCCGC GTGGCTTCGC CCCGTCGCCG
CACCCGGGCA ATCCGCCCCA CCCGGGGCCG CGCTTCAGCC CACCGACACC CGGTTCGGCA
CCGCACGGCC CGGGCCCACA GGGACCGCGT CCGGGACCAC AAGGGACCGG CCCGAACGGT
TCTCGTCCCG ATGCCCCTGG TGGTTCTCCG CAGCAGCGTC CGACCACGGA ACCATCCTCA
CGGCAACCGG CCGACGGTCG ACCGCCGCAT CAGGGCGACG GCCGGGGCGG CAACGATCCG
TCCCGCGATC CGCGCACCGA TCGCGACCCA CAGAACCGGC CGCAGGACGA TCGGCCGCAC
GGCGACGACC GGGATACCGA ACGGCCCGAC CGCGACTCGG ACACCGAGCG GCCCCACGAC
CGACCTCAGG ACCGGCCCGA CGACCGGGCG GACCACGACA ACGACGGCCG GCCCGACGAT
CGACTGACGC CGGAGGAGGT CAATCAACGG CACACCGAGC GCACCCCCGC GGGGATGTCG
TTCCACCGCG GTGATCCGGA GATGGGTGAT CTGCCGCACC GGGTCAAGCC GGACCCGGAC
GGCCGCTACA CCGTGGACGT GCACGTCACG CCGGACGGTC ACGCCCGCAT CGGCGGCCAC
CGGTACACGC CGGAGGAATT CGCCGACATC CTGCGTCGCA ACGGCGATTA CGACGGCCGT
CCGATCCGGC TCATCGGTTG TGACGCGGGC TCCAACGACT TCGCCCGGCG GCTGTCACAC
GAACTCGACA CCGAGGTGTT GGCGCCGAAC AAACCGGCGT GGACCGACGC CAACGGCAAC
GTCTTCTCCT CCGACTACGA GATCGGCCCG GACGGCAAAC CGCGTCCGAA GATCCCGCCG
AACGGCGAGT GGTCGACGCA CAGCCCCGAC GGTTCGACGT CCCGAACGGG CGACGACGGG
TTCACTCCGC ACACCGGGGA TGCGGACAGG TCGGATGTCG ACGTGGACTC CTCGCGATCG
CGTAGGGACG AAGACCCCGA TGTGATCGAC TGGCGGGACA AGCCTGGGAC GGGTGAAGAC
AAAAGATCTC TACGTCAGAA AATCGCCGAC CCACAATTCC TCGAGGATAA CTACTATTGG
CGTACTCGGG AAGACGGAAC CGTGGAACTT GTCGTCAAAC ACAGCCGTGT GAGCTCGGAT
AACCCGCTGC CACCACTCGA CTGGGACCCG GTCAATGAAA GGGCGTACTT CAAGGACGAC
CGACCTCCGT TGGAGCGCGC TCAATTCGTT GACGAACGTT CGGTGAAGGT CGAGCGTCCC
CGATCGTCCC AAGATCAGGA AGACATCGAC GCCGACGGCG AGGTCGATAC CGGCCCGGAC
AATCCGTCCA AGTCGGACGA TTCATCGGCT TCGAACGACT CCCCGAACTC CGATACCGAT
GAGTATCCGA GCACGCAAAA TTGGAGGGAC GAGGATTACG CGAAGCTCGA CGAGATGGTC
GAAGATCGCG AGCGAAAACT CGAGCGGAAA TCCGAGATAG GAGAGAAGAC CGAGGAGAAC
GCGCAGGAGT GGAAGGACGC GCACAACGAG GCGAACGACG CCTCCGAGGC CCTCGGTGAG
CAAGCATCGA CGCACGCCAT CAAAGACCAG GTGTACCAGA AACTGGTCCA GCAGTACGGT
GGCGACAACG TCACCCTGCA ACCGCATCCC GAGGGTGGGG AACGCTTCCA GGCCTTCGAC
AACGACGGCA ACCTCATCGC CGAGATCAAA CCTCACCATT CCATCGAAGG ACAGCCGGGT
GCGAACAGCT TCGATCAGAT CTGGGAGGTC GACTACCACA ACGGTGGAAA ACCACATTTC
ATCGTGCACG AGGCGAAGGG TCCGGGCGGC GGAACCAGTT CTCACTACTT GAGTGATGAG
AACCGGACTG TCGAACAAGG GCATCCCGAT TACTTTCAGA ACATGCTCAG AAAGCTCGCA
AGCAAGGACG CCGATCTAGC AGCCGAACTT CAGGAGGCTT TGCTCGACAA CCGACTCGAT
TACGTCAAGG TTCGAGCCCT TGTGGACACA TCGACGACAC CGCACAGCTA CGCGGGATAC
GAGTATCATC CTTACGCTGG CTACGATTAC AAAGGTCCAT TCAGCGCCGA GGCGACCCGC
GAGCGGAACG AGGTTTGA
|
|---|
| Protein sequence | MSDNNPLVAE APQDGAGPGP WTSGNNDHGW VTGIGIAESA IDTFNGIKDG NWIDIGLGTV
GLVAEGAAAA IDPFGWLMSS VASFLMEHIQ PLKDMLDSVC GDPPVIQSYS ETWANVAAHL
EETQVTFANA VKNSTTGWTG PAADAYRESC KEQEEALAGA ATTASGISTV VMLFGEVVAF
VRETVRDLIA DLVGKLISWV LETVFTLGFG TPVVVAQAVT AISKWGTKIA DFLKRLTRTI
SQVSPLLGRL IEVFGSVMKV CGKILGKVTG LDVIRKKNII DGGFFQRPGR NSDVDLDGGG
SGNGGSSGGS GGGANGNGGS SGGGDSGSGG GADGDGGSGS NRGSDGGTGG DSGSSPNGSS
SDTGPDSSTT PRSNPSNTSD STNTPSRSDS RTGGGESPSG DSPPRRSTSS PGGGSSDGPV
STSTGGGGGT STTPRVDTSH STGTGGSSST GSPAAGHHFG PSGSTSSHSP SPDSSPHGSG
GTQSSPSPHS TAGDGPGTTR SNPDTASSSN GNTDSPRGNT QTRPENQPST SHDSPSQATP
RQDSPYANDS GRSPQSPPQG PSPGTSSGPS SGPSPTHPDS PFSRPNTGTH ADSTTASGLS
SPTSPHATPP RTDSGGFSPP PQRGPEGGST PSTPHAQQPM GTGPAATPNS GGTTPGGSSG
TSPGGRPHGP QGWTGTPGSP GARPHSETPA TPTTPATQPR PGGPPQPSTS PQSHAPHTPT
PQRPGPPQGT THGPGGQYGP GPHAQPHMPP AVPRGFAPSP HPGNPPHPGP RFSPPTPGSA
PHGPGPQGPR PGPQGTGPNG SRPDAPGGSP QQRPTTEPSS RQPADGRPPH QGDGRGGNDP
SRDPRTDRDP QNRPQDDRPH GDDRDTERPD RDSDTERPHD RPQDRPDDRA DHDNDGRPDD
RLTPEEVNQR HTERTPAGMS FHRGDPEMGD LPHRVKPDPD GRYTVDVHVT PDGHARIGGH
RYTPEEFADI LRRNGDYDGR PIRLIGCDAG SNDFARRLSH ELDTEVLAPN KPAWTDANGN
VFSSDYEIGP DGKPRPKIPP NGEWSTHSPD GSTSRTGDDG FTPHTGDADR SDVDVDSSRS
RRDEDPDVID WRDKPGTGED KRSLRQKIAD PQFLEDNYYW RTREDGTVEL VVKHSRVSSD
NPLPPLDWDP VNERAYFKDD RPPLERAQFV DERSVKVERP RSSQDQEDID ADGEVDTGPD
NPSKSDDSSA SNDSPNSDTD EYPSTQNWRD EDYAKLDEMV EDRERKLERK SEIGEKTEEN
AQEWKDAHNE ANDASEALGE QASTHAIKDQ VYQKLVQQYG GDNVTLQPHP EGGERFQAFD
NDGNLIAEIK PHHSIEGQPG ANSFDQIWEV DYHNGGKPHF IVHEAKGPGG GTSSHYLSDE
NRTVEQGHPD YFQNMLRKLA SKDADLAAEL QEALLDNRLD YVKVRALVDT STTPHSYAGY
EYHPYAGYDY KGPFSAEATR ERNEV
|
|---|
| |