| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_23420 |
|---|
| Symbol | |
|---|
| ID | 8387666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2530082 |
|---|
| End bp | 2531014 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644976393 |
|---|
| Product | carbohydrate ABC transporter membrane protein |
|---|
| Protein accession | YP_003134175 |
|---|
| Protein GI | 257056343 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.93855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGA CCGCAGCACG TGACGCGAAG GCGTCCGTCC CCGATTCCGA CACCGGTGCG
GCGACCGGCC GCACCGGTCC CCACCCGATC ATGGCTGTGC CCGCGTTGGC CTTCTTCGGC
GTCTTCGCGT TGGTGCCCCT GGTCGGTGTG GTCGTGCTCA GTTTCGTGCA CTGGGACGGT
ATCTCGGCCA TGACCTGGGC CGGATTCGAC AACTGGGGAG AGGTGCTCAC CGACCCCACG
ACGCTACGCG CGGTCTGGCT CAGCGTCCAG GTCATGGTCT TCAGCTGGCT GGTGCAGACC
CCCATCTCGC TGTTGCTGGG CGTGCTGATC GCCGGACGTG GTCGCTATCG GGCCGTACTC
GGGGTGCTGT ACTTCCTGCC GATGCTGCTG TCGTCGGCGG CCATCGCCAT CTCGTTCAAG
GCGTTGTTGG ACCCGAATTT CGGGATGAGT CTGGCGTTCA ACGCGCAGGT GTTGGCCCAG
GACTGGCTGG GAGACCCCAG TCTGGCGCTG TACGTCGTCG TGTTCGTGAT CGCCTGGCAG
TTCGTGCCGT TCCACACTCT GCTCTACCAG GCGGGGGTGC GGCAGATCCC GGCGTCGTTG
TACGAGGCGG CGCAATTGGA CGGTGCGGGC CGGATCCGGC AGTTCTTCCA CATCACCCTG
CCCCAGCTGC GGTACACGAT CATCACCTCG TCCACGCTCA TGCTCGTCGG TTCGTTGACC
TATTTCGACC TGGTGTTCGT GCTGACCGGG GGAGGGCCGG GCGAGGCGAC GCGCATGTTG
CCGCTCGACA TGTATCTCAC CGGGTTCTCG AGCAACGAGA TGGGTAAGGC CAGTACGCTC
GCCGTCCTTC TGGTGGTCAC GGGACTCGCG TTGGCCCTGG GGCTGTCCCG GTGGGCGAAT
TTCCGTCGCG GTAGCCAGCT GGAGGGGGCG TGA
|
|---|
| Protein sequence | MTVTAARDAK ASVPDSDTGA ATGRTGPHPI MAVPALAFFG VFALVPLVGV VVLSFVHWDG
ISAMTWAGFD NWGEVLTDPT TLRAVWLSVQ VMVFSWLVQT PISLLLGVLI AGRGRYRAVL
GVLYFLPMLL SSAAIAISFK ALLDPNFGMS LAFNAQVLAQ DWLGDPSLAL YVVVFVIAWQ
FVPFHTLLYQ AGVRQIPASL YEAAQLDGAG RIRQFFHITL PQLRYTIITS STLMLVGSLT
YFDLVFVLTG GGPGEATRML PLDMYLTGFS SNEMGKASTL AVLLVVTGLA LALGLSRWAN
FRRGSQLEGA
|
|---|
| |