| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_23370 |
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| Symbol | |
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| ID | 8387661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 2523752 |
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| End bp | 2525359 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644976389 |
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| Product | arabinose efflux permease family protein |
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| Protein accession | YP_003134171 |
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| Protein GI | 257056339 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.517259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCGCCAT CGGATTCTTC TCACTCGACA CGCGGAGGCT GCGTGACTTC TTCCATGTCC
CCGCCCTCGC CCCGCGAGGA CAGCCGCACC AGCGTGGCGC GACCGTTGAC GGGGCTGCTG
CTCGTGCTCT TCGTCGCGAT GCTCAGCTCG ACCGTCGTCT CCATCGCCCT GCCGCGGATC
ATCGGGGCAC TGAACGGCAG CCAGACCCAG TACACCTGGG TGGTCACGGC GACACTGCTC
ACGGCCACCG CCTCCACGCC GATCTGGGGA AAGCTGGCCG ACCTCTACAG CAAGAAAGCA
CTCGTCCAGA TCGCGATCGG GATCTTCGTA GCCGGGTCGC TGATCAGTGG TTTCGCCCAG
GACGCGGGAC AACTCATCGC CGCCCGCGCC TTCCAAGGAC TCGGTGTCGG TGGTCTGCAG
GCACTCGTTC AGACGATCAT CGCGGCGATG ATCCCGCCGA AGGAACGGGG CCGTTACAAC
GGTCTCCTCG GCGGCGTGAT GGCAGTGGCC ACCGTCAGCG GACCGTTGCT GGGTGGTGTC
ATCACCGACA CGTCCTGGCT GGGCTGGCGT TGGTGCTTCT TCGTCGGCAT CCCGTTCTCC
CTCGTGGCCC TGGTGGTCCT GCAGCGCTGG CTGCACCTGC CCGCGATCCG GGATCGGGAG
ACCGTGCAGG TCGACTACGT CGGCGCCACG CTCATCGCCA TCGGCGTGAG CGTGCTGCTG
ATCTGGGTGA GCTTCGTGGA CAACTCGTTC GCCTGGCTGT CGTGGCAGAC CGCCGCGCTG
GTGGGCCCCG CTCTGGCGGT CCTCGCTATC GCCGTCTGGT GGGAATCGCG TGTGCCCGAG
CCGGTGCTGC CGCTGTCGGT GATCCGCCAG CCCGCCCCCG CGCTGGCGAT CCTGGCCAGC
CTCTCCGTGG GGATGGCGAT GTTCGGCGGC GCCGTGTTCC TCGGCCAGTA CTTCCAGGTC
AGCCGTGGCT ACAGCCCCAC GGAAGCCGGA CTTCTCATGA TCCCGATGAT GGTGGGCACG
TTCGTCTCGT CGACCGTCTC GGGACAGCTG GTCAGCCGTA GCGGAAGGAT CAAGTGGCAT
ATCGTCACGG GCACGGTGAT CCTGGTCGCC GGTTTCGGTG TGCTCTCCAC GCTCGATCGC
GAGACCCCGC TGCTCGTCGT CTTCACCGGC CTCTTCGCCG TCGGGGTCGG CGTCGGGATG
TCGATGCAGA ACCTCGTGCT CGCGGTGCAG AACACGGTGG CGCTCCGTGA CGTCGGAGCG
GCCAGTGCGT CGATCACGTT CTTCCGCTCA CTCGGTGGCA CCATCGGCAT CTCGATACTC
GGCGCGGTGC TGGCCAACCG GGTCAGCGAC AGCGTCCAGA AGGGGCTACG GGAAGCGGGT
GTCCCCGCCA CCGCCTCGGG TGGGGCGAGC AACCTCAATC TGGAGGCCCT GCCCGAGCCG
ATCCGCGCGA TCGTGGAAAC GGCCTACGGC GAGGCGACGG GACACATCTT CCTGCTCTCC
TCGATCATCG CGGTGGTCGG TGTCGTCGCG GCTTTGCTGC TCAAGCCCGC GCCGCTGCGC
ACGACCCTGG ACGTGGAGCC GACCGAGAAG GACCAGGTTC GCTCCTGA
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| Protein sequence | MPPSDSSHST RGGCVTSSMS PPSPREDSRT SVARPLTGLL LVLFVAMLSS TVVSIALPRI
IGALNGSQTQ YTWVVTATLL TATASTPIWG KLADLYSKKA LVQIAIGIFV AGSLISGFAQ
DAGQLIAARA FQGLGVGGLQ ALVQTIIAAM IPPKERGRYN GLLGGVMAVA TVSGPLLGGV
ITDTSWLGWR WCFFVGIPFS LVALVVLQRW LHLPAIRDRE TVQVDYVGAT LIAIGVSVLL
IWVSFVDNSF AWLSWQTAAL VGPALAVLAI AVWWESRVPE PVLPLSVIRQ PAPALAILAS
LSVGMAMFGG AVFLGQYFQV SRGYSPTEAG LLMIPMMVGT FVSSTVSGQL VSRSGRIKWH
IVTGTVILVA GFGVLSTLDR ETPLLVVFTG LFAVGVGVGM SMQNLVLAVQ NTVALRDVGA
ASASITFFRS LGGTIGISIL GAVLANRVSD SVQKGLREAG VPATASGGAS NLNLEALPEP
IRAIVETAYG EATGHIFLLS SIIAVVGVVA ALLLKPAPLR TTLDVEPTEK DQVRS
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