| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_23270 |
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| Symbol | |
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| ID | 8387651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 2511161 |
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| End bp | 2513248 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644976380 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_003134162 |
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| Protein GI | 257056330 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0746939 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAGAA GCGGTGGGCT GAAGCGACTG GTGTTCCTGG GCTCGGCGAC GGCGATCATC
GCGTTGTCGG CCTGGGCGAT CATCACCCCG GACGGCGCCT CGCACGTCAT CGGTACCGCC
GTCACGTGGG TCTCTTCCAA TCTCGGCTGG TACTACTTCC TCGTCGCCAC GCTCTACCTG
GCGTTCGTGG TCTTCGTGGC GGTGTCGCGG TACGGCTCGG TGAAACTCGG CCCGGAGCAC
TCCACTCCCG ACTACGGGGT GTTCTCGTGG GCCGCCATGC TGTTCGCCGC GGGGATCGGC
ATCGATCTGA TGTTCTTCTC CGTGGCCGGA CCGGTGAGCC ACTACCTCGC CCCGCCTGGA
GGCGAGGGAC AGACCGTGGA GGCCGCACGG CAGGCGGTCG TATGGACCCT GTTCCACTAC
GGCATCACCG GATGGTCGAT GTACGCTCTG ATGGGACTGG CGCTCGCATA CTTCTCGTTC
CGCTACCGTC TTCCCCTGGC GATCCGCTCC GCCCTGTACC CCATCATCGG CAAACGCATC
CACGGCCGCT TCGGCGACAC CGTGGACATC GCCGCCATCC TCGGTACGGT CTTCGGCATC
TCGGTATCAC TCGGGATCGG TGTCGTTCAG CTCAACTACG GGCTGAACTT CATGTTCGGC
ATCCCCGAGG GAATCGCCGC CCAGATCGGT CTGATCATTC TGGCCGCCTT CATGGCCACC
GCTTCCGCGG TGTCGGGTGT GGACAAGGGG ATCCGCAGAC TCTCGCAGCT CAACGTCATT
CTCGCGGGAA TCCTGATGTT GTACATACTC GTGCTGGGCG ATCCGGCGAG TCTGCTCAAC
GCCTTGATCC TCAACATCGG CGACTACATC AGCCGGCTCC CGGCGATGAC CTTGAACACC
TTCGCCTACG ACGAACCGTT CCCGATCGAG TGGCTCAACG ACTGGACGTT GTTCTTCTGG
GCGTGGTGGA TCGCCTGGGC CCCGTTCGTG GGCCTGTTCC TGGCGCGGAT CTCACGGGGC
CGCACCATCC GACAGTTCGT GGCCGCCACC CTCGTCGTAC CGTTCCTGTT CACCCTCACG
TTCCTGTCGG TACTGGGCAA CAGCGCGCTC AGCGTGGTGC GGCAGGGCAA CCTCGAATTC
GGCACCACGG CCATGGAGAT GCCCGAACGG GGTTTCTACG GGCTCCTCGC CCAGTACCCG
GGCGTCGTCT TCAGCGCGAG CGTGGCCACG TTCGTCGGCC TGTTGCTGTA CGTGACCTCG
GCCGACTCCG GGGCGTTGGT GATGGCCAAC CTCAGTTCCC GGCTGCCCAC TCCCCTCACG
GACGCCAAAC CGTGGCTGCG TGTCTTCTGG GCCATGGCGA CCGGACTTCT CACCATGGCC
ATGCTCATCG TCGGCGGCGT GGACGCGCTC ACCAGCGCCA CCATCATCAT GGGGTTGCCG
TTCTCGGTCG TGATGCTGCT GATCACCTGG GGACTGCACA AGGCGTTGCG GGTGGAACGT
TTCCGCAGGG AGGCGATGGT CGCCACGTTG CCTTCGTCGC TGTCGGTGCG CACCGTCTCC
CTGCCGGGGG AAGGACCGAG CGCCTGGCGA CACCGGTTGG CGCGAGCGCT CAGCCACCCC
AACAAACGCG CGGCGAGAAG GTTCTTGACC GACGTGTGCC GACCCGCGTT GCAGGAGGTG
ACCGAGGAAT TGCGGACCCG GGACGTCGAG GCGAGCTTGA GTGAGGACAT CGACCCCGAG
ACCGGGTTAC CGCGCCTGAC GCTGCGGGTG CCGATGGGAA CCGAGCACTC CTTCGGCTAC
CGACTGTATC CCGTGCGGCG CGCCACGCCT TCGTACGCCA TGCGGGCGGT GACCGCGGAC
GACACCTACT ACCGGGTCGA GGTCCATCTG CCCGAGGGTG GGCAGGGCTA CGACGTCATG
GGCTACACCC GGGAGCAACT CATCGGTGAC GTCCTCGACC AGTACGAACG CCACCTGGAG
TTCCTGCGGT TGCATCGGGA GGCCGAAGCC GGGGAGGTGC TGCCCGACTA CACGCCTCAG
ACCTCGGACC CGGACAACGA ACCCCCGCTG CGTCGGGATT CCGATTGA
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| Protein sequence | MGRSGGLKRL VFLGSATAII ALSAWAIITP DGASHVIGTA VTWVSSNLGW YYFLVATLYL
AFVVFVAVSR YGSVKLGPEH STPDYGVFSW AAMLFAAGIG IDLMFFSVAG PVSHYLAPPG
GEGQTVEAAR QAVVWTLFHY GITGWSMYAL MGLALAYFSF RYRLPLAIRS ALYPIIGKRI
HGRFGDTVDI AAILGTVFGI SVSLGIGVVQ LNYGLNFMFG IPEGIAAQIG LIILAAFMAT
ASAVSGVDKG IRRLSQLNVI LAGILMLYIL VLGDPASLLN ALILNIGDYI SRLPAMTLNT
FAYDEPFPIE WLNDWTLFFW AWWIAWAPFV GLFLARISRG RTIRQFVAAT LVVPFLFTLT
FLSVLGNSAL SVVRQGNLEF GTTAMEMPER GFYGLLAQYP GVVFSASVAT FVGLLLYVTS
ADSGALVMAN LSSRLPTPLT DAKPWLRVFW AMATGLLTMA MLIVGGVDAL TSATIIMGLP
FSVVMLLITW GLHKALRVER FRREAMVATL PSSLSVRTVS LPGEGPSAWR HRLARALSHP
NKRAARRFLT DVCRPALQEV TEELRTRDVE ASLSEDIDPE TGLPRLTLRV PMGTEHSFGY
RLYPVRRATP SYAMRAVTAD DTYYRVEVHL PEGGQGYDVM GYTREQLIGD VLDQYERHLE
FLRLHREAEA GEVLPDYTPQ TSDPDNEPPL RRDSD
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