| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_20230 |
|---|
| Symbol | |
|---|
| ID | 8387350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2157547 |
|---|
| End bp | 2159094 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644976086 |
|---|
| Product | acetyl-CoA acetyltransferase |
|---|
| Protein accession | YP_003133868 |
|---|
| Protein GI | 257056036 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00768675 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.711797 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGAGT GCTCGATGCC GGACGAGTCA CGGCTTCCTG TGCTGATCGG TGTCGGACAA
CTGCGCAACA ATCCGGAACG GACACATGAT GCCGCCCGGG AACCGCTGGA GCTGGCCGAA
GAGGCCGCTC GCCGCGCGGT GAAGGACGCC GGTGTCGACG CGTTGCTGAA CAGTGTCGAC
ACGATCACGG CGGTCAAGAC CAGTAGCTGG GCCTACGACG ATCTCCCGTC GTTGCTCGCC
GGACGATTGG GCATCTCCCC GACGCGCACG TCGACCACCA CGGTGGGAGG ACACTGGCCC
GCGGCGATCC TCGACGCCGC CGCGGCGGAG ATCGCCGCGG GCGCCTCACG CGCCGCTCTC
CTGGTGGGGG CCGAAGCGCA GGCATCGGTG TCGGCGTTGC TGAAGGCGGG CGTGGACCCG
GGGCGGGACC ACGGATGGAC CACGGCTCCC GGTGGCCCCC CGGCCTTCGA CCCCGACGAT
TTGGGAAGCC CGGCCATGCA GGCGGCGGGA CTGATCATGC CGACCAGGGT CTACCCGCTG
TTCGAGAACC GATTGCGCCA TGCGCTGGGA CAACGACCGG AGGAGGCGAC CGCGTGGTCG
GCCCGCCTCT ACGCGGCGTT CTCCGAGGTG GCCTCCGGCA ATCCCGCCGC GTGGACACCG
ACACCGCGTA CCGCCGAGGA GATCGCCACC GTCGGCCCGG GGAACCGGAT GGTGTGCGAG
CCCTATCCCC TGGCGATGAA CGCGATGCCG CATGTGGACC AGGCCGTGGC GGTGCTCGTG
ACCTCCGTGG CACTCGCCCG GGAACACGGC GTCGACGAGG ATCGCCTCGT GTACGTGTGG
GGCGGGGCGG GCGCGAGCGA TTCCCCCGAC GTCCTCAGCC GCCCCGACTT CGCGCGGTCC
GCCGCGTTGG AATCGGTCCT GCGCCGGTGC CTGGACCGAG GCGGCCTCGA CGCGACGGAA
CTGGATGTCC TCGACGTCTA CAGCTGTTTT CCCGTCGTGC CCAAACTGGT GATCCGACAG
TTGGGCTTGG CCGACGACGT GGTCCCGACC GTCACGGGAG GACATTCCTC GTTCGGTGGC
CCGTTGAGCA GCTACTCCCT GCACGCGGTG GTGTCGGTGG TGGAGCGACT GCGGGAGGGG
GCCACGGTGG GACTGGTCCA CGCCAACGGC GGCTATCTGA CCGACCAGCA CGCCGTCCTC
CTCGGCAGGG GACCACACGC GGACGGCTAC GTGGGAGAGC CCGAGCCGGT GTCGACCGCG
ACGCGGGAGG ACGTACCGGC GTTGCGGGAA CCGAGCGACG ATGCCGCCGA ACCGGCGGTG
GTCGAGACCG CGACGGTCGA GTACGGCCGT GACGGCACCC CGTCCCAGGC GTTCCTCGTC
GCCCGAGCAC AGGACGGGGC GCGACTGTGC GGTCAGACCA GACCCGGGGA CACGGCGAGT
GCCCGCGTGC TGTCGCTCGC CTCGGGGTCC GAGGTGGTCG GACGCAGGGT CCGGATCTCC
CGAGCCGGGC CGGATCAGGG GTTCCTGAGC GTTGATACCG CTGACTGA
|
|---|
| Protein sequence | MGECSMPDES RLPVLIGVGQ LRNNPERTHD AAREPLELAE EAARRAVKDA GVDALLNSVD
TITAVKTSSW AYDDLPSLLA GRLGISPTRT STTTVGGHWP AAILDAAAAE IAAGASRAAL
LVGAEAQASV SALLKAGVDP GRDHGWTTAP GGPPAFDPDD LGSPAMQAAG LIMPTRVYPL
FENRLRHALG QRPEEATAWS ARLYAAFSEV ASGNPAAWTP TPRTAEEIAT VGPGNRMVCE
PYPLAMNAMP HVDQAVAVLV TSVALAREHG VDEDRLVYVW GGAGASDSPD VLSRPDFARS
AALESVLRRC LDRGGLDATE LDVLDVYSCF PVVPKLVIRQ LGLADDVVPT VTGGHSSFGG
PLSSYSLHAV VSVVERLREG ATVGLVHANG GYLTDQHAVL LGRGPHADGY VGEPEPVSTA
TREDVPALRE PSDDAAEPAV VETATVEYGR DGTPSQAFLV ARAQDGARLC GQTRPGDTAS
ARVLSLASGS EVVGRRVRIS RAGPDQGFLS VDTAD
|
|---|
| |