| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_20210 |
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| Symbol | |
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| ID | 8387348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 2155366 |
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| End bp | 2156496 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644976084 |
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| Product | DNA polymerase LigD-like ligase domain-containing protein |
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| Protein accession | YP_003133866 |
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| Protein GI | 257056034 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02779] DNA polymerase LigD, ligase domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0459497 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.30843 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCTCGC GTGGTCTCTT TCGGGGCATA CTGTGCCGTC GCCTCGGCAT CGGCACCGTC
GTCGCTGTCG GCACCGTCGC CCTGGAGAGC CCGGCCGTCG TCCTCGAAGG ACTCCTCTAT
CTGGGTGACT CAGCTGCGCT GGAGACGATC CACGCCGAAT ATGAGAACAT GGCCCCACCC
ACGCCGCTGC CACCGATGCT CGCCGTCTCC GGTGACGTAC CCGAAGGCGA TCAGTGGGTC
TATGACTGGA AATGGGACGG CGTGCGGGCG ATCGTGGGGA TCGAGGGTGG CGAGGTGCGC
GTGCATTCCC GCGCTCTGCG AGACATCACC AGTCGCTATC CCGAATTGCA GGAACTCGCC
GCGGCCACCC GTGCCAGGCT GTTGCTCGAC GGGGAGATCG TCGCACTCGA CGAACAGGGC
AGGCCCGACT TCGACCGACT CCAATCCCGC ATGCAGGTCG GTCTACCCAC CCCACGCATG
CTGCGCGAGA GCCCGCTGTA CTACTACGTC CTCGACCTAC TCGTCGCGGA CGGCGAGAAC
CTCTGTGGAT CTTCCTACCG CCACCGCCGG GACCGACTCG CCGAGCTCGG GCTGCCCGCC
CCTCCCACCA TCCGCCCGCC CGATCCCCAC GCACGGATCT CCGGTAGCGG ACTGTTGGAC
ATCGCGGCCG AGCACGGGTT CGAAGGCATC ATGGCGAAGC GTCTCGACTC CCCTTATCGG
CCCGGTGTTC GATCGACGGA CTGGATCAAC ACGCCACTGC GCATCCGGCA GGAAGTGGTG
ATCGGAGGCT GGGTGCCCGG AAGAAGCCGA CACGCCGGCA CGCTGGGCAC CCTGCTCCTC
GGCGCCTACG ACCCCTCCGG CGCGTTGAGC TACATCGGAC ATGTCGAGAC AGGACGTCCC
GACCCGAGTT CGGAGGCCCT GTTGGGCAAG CTTGAAGCGC TCACCAGGCC GTCGAGTCCG
TTCGCCACCC CCGTCCCCCG CCGTCGGGCA CGCCATGCCC GATGGGTGGA GCCCGAACTC
GTGGGCGAGG TGGAGCACCG GCGGTGGACG AACGACCGCA CGCTCTGGCG TCCCTCCTGG
CAAGGCTTAC GCACCGATCG CGAGCCGGCC GAGGTCACAC TGCCGGTTTG A
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| Protein sequence | MISRGLFRGI LCRRLGIGTV VAVGTVALES PAVVLEGLLY LGDSAALETI HAEYENMAPP
TPLPPMLAVS GDVPEGDQWV YDWKWDGVRA IVGIEGGEVR VHSRALRDIT SRYPELQELA
AATRARLLLD GEIVALDEQG RPDFDRLQSR MQVGLPTPRM LRESPLYYYV LDLLVADGEN
LCGSSYRHRR DRLAELGLPA PPTIRPPDPH ARISGSGLLD IAAEHGFEGI MAKRLDSPYR
PGVRSTDWIN TPLRIRQEVV IGGWVPGRSR HAGTLGTLLL GAYDPSGALS YIGHVETGRP
DPSSEALLGK LEALTRPSSP FATPVPRRRA RHARWVEPEL VGEVEHRRWT NDRTLWRPSW
QGLRTDREPA EVTLPV
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