Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_20210 |
Symbol | |
ID | 8387348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2155366 |
End bp | 2156496 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644976084 |
Product | DNA polymerase LigD-like ligase domain-containing protein |
Protein accession | YP_003133866 |
Protein GI | 257056034 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0459497 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.30843 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCTCGC GTGGTCTCTT TCGGGGCATA CTGTGCCGTC GCCTCGGCAT CGGCACCGTC GTCGCTGTCG GCACCGTCGC CCTGGAGAGC CCGGCCGTCG TCCTCGAAGG ACTCCTCTAT CTGGGTGACT CAGCTGCGCT GGAGACGATC CACGCCGAAT ATGAGAACAT GGCCCCACCC ACGCCGCTGC CACCGATGCT CGCCGTCTCC GGTGACGTAC CCGAAGGCGA TCAGTGGGTC TATGACTGGA AATGGGACGG CGTGCGGGCG ATCGTGGGGA TCGAGGGTGG CGAGGTGCGC GTGCATTCCC GCGCTCTGCG AGACATCACC AGTCGCTATC CCGAATTGCA GGAACTCGCC GCGGCCACCC GTGCCAGGCT GTTGCTCGAC GGGGAGATCG TCGCACTCGA CGAACAGGGC AGGCCCGACT TCGACCGACT CCAATCCCGC ATGCAGGTCG GTCTACCCAC CCCACGCATG CTGCGCGAGA GCCCGCTGTA CTACTACGTC CTCGACCTAC TCGTCGCGGA CGGCGAGAAC CTCTGTGGAT CTTCCTACCG CCACCGCCGG GACCGACTCG CCGAGCTCGG GCTGCCCGCC CCTCCCACCA TCCGCCCGCC CGATCCCCAC GCACGGATCT CCGGTAGCGG ACTGTTGGAC ATCGCGGCCG AGCACGGGTT CGAAGGCATC ATGGCGAAGC GTCTCGACTC CCCTTATCGG CCCGGTGTTC GATCGACGGA CTGGATCAAC ACGCCACTGC GCATCCGGCA GGAAGTGGTG ATCGGAGGCT GGGTGCCCGG AAGAAGCCGA CACGCCGGCA CGCTGGGCAC CCTGCTCCTC GGCGCCTACG ACCCCTCCGG CGCGTTGAGC TACATCGGAC ATGTCGAGAC AGGACGTCCC GACCCGAGTT CGGAGGCCCT GTTGGGCAAG CTTGAAGCGC TCACCAGGCC GTCGAGTCCG TTCGCCACCC CCGTCCCCCG CCGTCGGGCA CGCCATGCCC GATGGGTGGA GCCCGAACTC GTGGGCGAGG TGGAGCACCG GCGGTGGACG AACGACCGCA CGCTCTGGCG TCCCTCCTGG CAAGGCTTAC GCACCGATCG CGAGCCGGCC GAGGTCACAC TGCCGGTTTG A
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Protein sequence | MISRGLFRGI LCRRLGIGTV VAVGTVALES PAVVLEGLLY LGDSAALETI HAEYENMAPP TPLPPMLAVS GDVPEGDQWV YDWKWDGVRA IVGIEGGEVR VHSRALRDIT SRYPELQELA AATRARLLLD GEIVALDEQG RPDFDRLQSR MQVGLPTPRM LRESPLYYYV LDLLVADGEN LCGSSYRHRR DRLAELGLPA PPTIRPPDPH ARISGSGLLD IAAEHGFEGI MAKRLDSPYR PGVRSTDWIN TPLRIRQEVV IGGWVPGRSR HAGTLGTLLL GAYDPSGALS YIGHVETGRP DPSSEALLGK LEALTRPSSP FATPVPRRRA RHARWVEPEL VGEVEHRRWT NDRTLWRPSW QGLRTDREPA EVTLPV
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