Gene Svir_20080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_20080 
Symbol 
ID8387335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2139992 
End bp2140810 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content71% 
IMG OID644976071 
Productcarbon monoxide dehydrogenase, medium subunit 
Protein accessionYP_003133853 
Protein GI257056021 
COG category[C] Energy production and conversion 
COG ID[COG1319] Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0549265 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0021832 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGATCCCCG CCGCGTTGCA GTACCGACGG GCGTCCTCGG TGGAGGACGC GCTGGCCATC 
CTGGCCGAAC ACGGTGACGA GGCGAAGCTG CTGGCAGGTG GGCATTCGCT GTTACCGCTG
ATGAAACTGC GCCTGGCCGC GCCCGAGATC GTCGTGGACA TCGCGGGACT GCCCGAACTG
TCCTATGTGC GCGACGAAGG GGAGCACATC GCGATCGGCG CGATGACCCG CTACCACGAC
CTGGTGGCCG ACCCGGTGCT GGTGGAGCAC GCGCCACTGG TGGCGCACGT CGCGGGCACG
ATCGGTGATC CACAGGTGCG GCACCGGGGC ACCATCGGAG GGTCGGTGGC GCACGGGGAC
CCCGCGGCCG ACCTGCCCGC CGCGTTGTTG GCCTGTTCCG CCGAGTTCGT GGTGCGCACC
CGGCAAGGAC AGCGCACCGT CGCGGCGGAG GAGTTCTTCC TCGGCCCCTT CACCACCGCC
CTCGACCCGG ACGAGGTGCT GGTCGAGGTG CGCGTGCCGA AACGGACCGG GGTGGGGTGG
GGCTTCGAGA AGTTCACGCG CCGTTCCATC GACTGGGCCA TCGTGGGTGT GGCCGTGTGC
GGCCACGCGG TCGCGCTGAT CAACATGGCG GGAACGCCGA TGCGGGCCGA GGCCACCGAG
CGGGCGTTGG CCGAGGGTGC GTCGATCAGC GAGGCAGCCC GGCTGGCGGC CGAGGGAACC
AGCCCCGCCG ATGAACCGCA CGCCTCCGGC GAGTACCGCC GCCACCTGGC GAGGGTGCTC
ACCGAACGTG CGCTGTTGCA AGCGGCTCGA CGCGGATGA
 
Protein sequence
MIPAALQYRR ASSVEDALAI LAEHGDEAKL LAGGHSLLPL MKLRLAAPEI VVDIAGLPEL 
SYVRDEGEHI AIGAMTRYHD LVADPVLVEH APLVAHVAGT IGDPQVRHRG TIGGSVAHGD
PAADLPAALL ACSAEFVVRT RQGQRTVAAE EFFLGPFTTA LDPDEVLVEV RVPKRTGVGW
GFEKFTRRSI DWAIVGVAVC GHAVALINMA GTPMRAEATE RALAEGASIS EAARLAAEGT
SPADEPHASG EYRRHLARVL TERALLQAAR RG