| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19660 |
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| Symbol | |
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| ID | 8387293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 2095072 |
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| End bp | 2098251 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644976029 |
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| Product | periplasmic component of the Tol biopolymer transport system |
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| Protein accession | YP_003133811 |
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| Protein GI | 257055979 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.26793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.00572239 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCGTGT GCAGCCGCAG GATCGTGTCA CGTCGCGTGG GTACCAGGGT TTTCACCGGG
TTGACCGCTG TCGGTGTCGT GGGGGTGTTG GCGGCCGGGG CGGTGGTGGT GCCGCGGTCG
GTGGCGGCGG CCGAGTCGGA GTGGGTGTCG GTGACCGTCA CCGAGGGCAC CAATCTCACC
GCGTCCGCTG CGCCGGACGG CAGTGTGGTC GTGGATCTGC AGGGGGTGCT TTTCCGGGTC
CCTGCCGGTG GTGGGGAGGC CGAGCGGCTG ACCTCGGTGG AGGACGAAGC CGCGATGCCC
GACGTGGGCC CGGACGGTCG CATCGCCTAT CAGGGTTATG CCGACGGTCG TTTCCACATC
TGGATCGCTG AGCCCGATGG CAGCGAGCCG GTGCAGCTCA CCCGCGGTGG GTTCGACGAC
CGGGAACCCC GTTGGTCTTT TGACGGCACC ACGATCGCGT TCTCGTCCGA TCGCGGTGGT
TCCTACGACA TCTGGACCGT CGATGTGGCC ACCGGTGAGC TCATCCGCCG CACCGACGAT
CCCGGGCAGG AGCACACCCC CGCCTGGCAT CCCGACGGGC GGAGCCTGGT TTACGTCGCC
GACGAGGGGA TCGCCGCGGT GGCCGCTGAC GGCACCACCC GCACCCTCGT TCCCTCCCCC
GGCGATGAGG TGGCCCTGCA CGCTCCTTCC TGGTCGCCGG ATGGCGGGCG GCTGGCTTAC
GTGCGCCATG AGGACACCCG CGCCGATCTC GTCGTCGACG GGCGTGTCGT CACCGAGGGG
GAGGACGTGT TCCTCTTCGC TGCCGAGTGG CTCGACGACC ACCGGTTGCT CTACACCGCT
GACGGCGCGC TCCGTATCCG TGATCTCGCC GAGGGGACCA CTCGCGACGT GCCGTTCGAG
GCGACGTTCG AGTTGCCGCG TGTCGACTAT CGGCGCAAGG AGCATGATTT CGACGATCGT
TCGCGCCACC GTGTGCGCGG CATCCTCACC CCGGTGTTGT CGCCGGACGC GCGGCAGGTG
GCGTTCGTCG CGTTGAACGA CCTGTGGCTC ATGCCGTTGG ACGGGACACC GCGCAGGCTC
ACCCACGATC GGTTCGCTGA GAGCAACCCG GTGTTCTCCC CTGACGGTCG GTATCTGGCC
TACGCCGCCG ACCGTGCCGG CACGCCCGAT CTGTATGTGC GGGATCTGCG TACCGGGCGG
GAGCGTCGGG TGACCGCGCT CGACGGCGCT GAGGTGTCCC CTGCGTTCTC CCCCGACGGG
AGGAAACTGG CCTTCCAGGA TCAGGATGGG GCCACCTATG TGCTCGACCT GCGCACCGGG
CGGGTGCGGC AGCTGGTGCC GCCGCTGTTC GGGCCCGGAC GCCCGAGTTG GTCGGCTGAT
GGCAAGACGT TGGCGTTCGT GGCGGTCAAA CCGTATTCGG CGCGGTTCCG GGAAGGCACC
AGCCAGATCC TCACCGTCGA TGTCGTCACC GGGAAGCAGA CCTATCACGC CCCTGGAGGG
GAACACGCCT CGATCTCCAC GCGCGGCGAC GACGGCCCGG TGTGGTCGCC GGACGGGCGG
CAGGTGGCGT TCGTGGTCGA CTCCACGTTG CGGATCATGC CGGTGGCCGC TGACGGCACT
CCCCGCGGTC CGGCCCGGGA ACTCAACGGT GAGGTCGCCG ACGCGCCGTC GTGGAGTGGG
GATGGCCGCC GGTTGCTGTA TCTGTCGAAC GGAACCCTGC GGCTGGCCGA CGTCACCACC
GGCAAGGCCC GTGACGTCGA CGTGCCTTTG TCTTATCGGC CCGATGTCGC GCGGGGTCGC
ACCGTCATCC ACGCCGGGGC GTTCTGGGAC GGTGAGAGTC GACGGCTGCG TCACGACGTC
GACATCGTCG TGCGGGACAA CCGCATCGAG TCGGTGACCC CGCACCGCGC GGGCACCCAC
CACCGTGGCC GGTTCGTCGA CGCATCCGAG TTCACCGTGA TGCCCGGCCT GGTGGACTCC
CATGTCCACC AGGAGTACGA GTCCCGTTTC TACGGTGATC GGCAGGGGCG GATCAGCCTC
GCCTACGGCA TCACCTCCAC GCTGTCGGTG GGTGATCAGG TGTATCGGGC GATGGAGGAT
CGCGAGTCGC TCGACTCCGG TGCCCGTGTC GGTCCCCGCT TCTACGCCAC CGGGGAGCCG
ATCGACGGCT CACGCGTCTA CTACAACTTC ATGCGCCCCA CCACCGGTGA TGAGCAGGTG
GAGCGGGAGT TGTCGCGGGC GGAGGCCCTC GACTACGACA TGATCAAAAC CTATGTGCGG
TTGCCCGCCG ACCGCATGCG GACGGTGATC GAGGCGGCCC ACGAGCTGGG GGTGCTCTCG
GCGTCGCACT ACCTGTCCCC CGGTGCGCAC CTCGGCCAGG ACGGCACCAC CCACCTGGCC
GCCACCCAGC GTCTCGGCTA CGCGCGCACG CTCACGGCCA CCGCCACTTC CTACGGTGAT
GTCGTCGCCC TCTACGGGCA AGGCGGGCGT TCGGTGACGG CCACACTGTT CACCACCGAG
TTCCTGGGGG CCGAGGAGAT CAGCGCCGAT CCGCGGCTGG CGCTGTATCC GTCGTGGACA
CGCGAGAAAC TGCTCGCCGA CACCCGTGAC AACACCACCG CACCGGCCGA TCCGGACTGT
GACAGCGCCG ATTGTCGCGA GGTGCGGGCT CTGCGGGCCG TCGCCGAGGC GGGTGGTCGC
GTGGTCGCGG GCACCGACGC GCCGTTGGCG TATGTGGGGG CCGGGTTGCA CGCCAACCTG
CGGGAACTCG TCGGCTACGG CTGGAGTCCG TACGATGCGC TGCGCACCGC CACCGTGAAC
GCCGCGGAGA ATCTCGGGGT CGCCGAGGAT GTGGGCACGC TGGAGCCGGG CAAGGTCGCT
GATTTGGTCC TGGTGCGGGG CAATCCGCTG CGTGACATCG ACGCGGCCAT GAATGTGGAG
GCGACCATGG TCGGCGGGCA CCTGTACACC TTGGCCGAGC TGTTGGGGCC CTACACCGGG
GGCCACGGTG CCACCACGGC CGCCGCGGCC ACCGGCGAGG AGGCCGCTCC CGCCCCGGCC
ACGGTGGTGT CGGAGTGGGC CGACCCTAAG GTCGGGGCCC GCTACTGGTG GCATGCCCCC
GAGGTGGTCG CCGCCGACCA CGCCCACTCT TGCAGCGCCT ACGACCGGCC TGGCCGTTAG
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| Protein sequence | MAVCSRRIVS RRVGTRVFTG LTAVGVVGVL AAGAVVVPRS VAAAESEWVS VTVTEGTNLT
ASAAPDGSVV VDLQGVLFRV PAGGGEAERL TSVEDEAAMP DVGPDGRIAY QGYADGRFHI
WIAEPDGSEP VQLTRGGFDD REPRWSFDGT TIAFSSDRGG SYDIWTVDVA TGELIRRTDD
PGQEHTPAWH PDGRSLVYVA DEGIAAVAAD GTTRTLVPSP GDEVALHAPS WSPDGGRLAY
VRHEDTRADL VVDGRVVTEG EDVFLFAAEW LDDHRLLYTA DGALRIRDLA EGTTRDVPFE
ATFELPRVDY RRKEHDFDDR SRHRVRGILT PVLSPDARQV AFVALNDLWL MPLDGTPRRL
THDRFAESNP VFSPDGRYLA YAADRAGTPD LYVRDLRTGR ERRVTALDGA EVSPAFSPDG
RKLAFQDQDG ATYVLDLRTG RVRQLVPPLF GPGRPSWSAD GKTLAFVAVK PYSARFREGT
SQILTVDVVT GKQTYHAPGG EHASISTRGD DGPVWSPDGR QVAFVVDSTL RIMPVAADGT
PRGPARELNG EVADAPSWSG DGRRLLYLSN GTLRLADVTT GKARDVDVPL SYRPDVARGR
TVIHAGAFWD GESRRLRHDV DIVVRDNRIE SVTPHRAGTH HRGRFVDASE FTVMPGLVDS
HVHQEYESRF YGDRQGRISL AYGITSTLSV GDQVYRAMED RESLDSGARV GPRFYATGEP
IDGSRVYYNF MRPTTGDEQV ERELSRAEAL DYDMIKTYVR LPADRMRTVI EAAHELGVLS
ASHYLSPGAH LGQDGTTHLA ATQRLGYART LTATATSYGD VVALYGQGGR SVTATLFTTE
FLGAEEISAD PRLALYPSWT REKLLADTRD NTTAPADPDC DSADCREVRA LRAVAEAGGR
VVAGTDAPLA YVGAGLHANL RELVGYGWSP YDALRTATVN AAENLGVAED VGTLEPGKVA
DLVLVRGNPL RDIDAAMNVE ATMVGGHLYT LAELLGPYTG GHGATTAAAA TGEEAAPAPA
TVVSEWADPK VGARYWWHAP EVVAADHAHS CSAYDRPGR
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