Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_19250 |
Symbol | |
ID | 8387252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2048881 |
End bp | 2051565 |
Gene Length | 2685 bp |
Protein Length | 894 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644975990 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003133772 |
Protein GI | 257055940 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.368916 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.454776 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACGGAGC GGTCTTCGAC GTTGATCGGC CGTGACACCG TGCTCGCCGA GCTTCGGGAT CAGGCGCGGC GGGTCGGGGA GCACGGGTCA CGGTTCCTGC TGCTCACCGG CGTGTCGGGC TGTGGTCGTA CGGCGCTGGT GGAACGGTTC GCCGCCCACC ACGACGGGCC CGTGCTCCGC GCGGTGGGCG CGTCCTGGGA AACCACCCGC GACTACGGAA TCATCGACCA GTTGGCGCCG GGTGCGGTGG ATGTATCCGA CCCCGTGGCC GCGGCCGAAC GGTTCGCCCG GCACCTCGCC GGCCTGGCCG GCACGGTGTT GGTGGTCGTG GACGACGCCC ACTGGGCCGA TGAGGCCTCG CTGCAGACCC TGGCCTCCAC GGTGCGGCAC CATCCCCGGC TGCGGTTGTT GGTGGTGGCC ACCGCGGTGG AGGGCGACAC GCGGGTTCCC GCCGGGATCG GGGCTTTGCT GCGGCGGATC GCCACCGTGG AGATCCCGGT CGAACCCCTC ACCGCGGCCG AGGTCGCCGC TGTGGCCGCG TCCTTCGGGA TCGTCCTGTC CCCACCGGTG GCCGACACGC TCTGCCGACA CACCGGTGGT CGGGTCCGGT ATGTGCGGGA GTTGTTGCGT GAGGTACCGC GACGAACATG GTCTCGGTTC GATCCCGTCC TGCCCGCGCC GGCGGCTGTG TCGGCCCGGG TCCGCGACCT GCTGGCGGAC TGTTCGGATG CGGCGCGCCG TTTCGTGGGC GCGGTCGCCG TGTTGGGTCC TGCTGCGGCG GTGCGGGAAG CCGCCGCGCT GGCCGAATTG GGCGACGAGG AGGTCCTCGA TGCCGTGGAC GAGGCCTGCA CCGCCGGGCT TGTGGTGCTC ACCGCGCACG GGCCGGCCGA GATCTCCCCG GCCGATTCCC TGGTGCGCGC GGCCGTGTTG GAGATCATGG GGCCGGCGGC GGCCGCCCGA GCGTACCGGC GCGCGGCCGA CCTCGTCGAC GATCGGGTTC GACGGTTGCG CCTGTTGGTG GCCGCTTCGT TCGCACCCGA CCAGGAGCTG GCGGACCGGC TCGACGCGGT GGCCGCCGAA CGCGCCGCCG AAGGCGCGTG GGCTGAGGCC GCCTCGCTGT TCACCGATGC GAGCCGGTTG ACCGAGGATC GGCTGCTGCG CGAACGCAGG CTCACCCGCG CGGTGGACGC GTTGATCGGC TCCGGCGACG CGTTCGGTGC CGCGGCCTTG GTGCCCGAGG TCGAAAGCCT GCGGGAGACA CCGTTGCGTA ACGCCGTGCT CGGCTACTTG GCGATCGTGC GTGGCCGGGC CGCGGAGGCC GAAGCGCGGC TTGACCGTGC CTGGGAGTTG GTCAATGTCG ACCGTGATCC GGACGTCGCC GCGTTGATCT GTCAACGCCA TGTCCTGCAC GCGTTGGTGC GGTGTCGTCC TGATGAGCTG GTGGCCTGGG CCGACCGGGC GGTCACACTG GCCGGTCCCG ACGCCCCGGC CGGGATCGAG GCGGCGGCCA TCCGCGGGCT GGGACTGGCC GCCCGTGGCC GGGTGGAACA GGCCAAAGCC GCCTACGCCA CGCTGGCCGA CCGTGTGCGC CACGGGGCCC AGGCGCAGCG TGTGCTCATG GGACGTGGAT GGCTCGATCT CACGCTCGAC CAGGTCGACG ATGCCCGGGC GGCGTTGGAG ACCGCGGTTC CGACGACCTT CTCCGGAGGG TCCACCCGTA TCTCGCTGTG GGCACGCGCA TGGCTGGCCC GGGCCCAGTT CCTCGCCGGG GAATGGGACG ACTCCCTGCG CACGGTGGCC GAGGCGGCGA CACTGCTCGA CCGCACGGGC ATCGTGCTGG CCGGTCCCCT GCTGCACTGG ACCGGAGCCA CGATCCACGC GCTACGTGGC CAGTGGCGGC AAGCCGAACG ACAACTCCGT CGCATCGACG CTGTGCCCCA GGAGTATGAG CTCATGCGCC TGTGCGCGTG TCTGGCCCGA GCCCAGATCG CCGAGGCCCG CGCCGATGCG GCCGGTGTGC TGCGGGCGTT ACGACCCTTG GCGCAAGGCT GGATCACCAC CCACCTCGAC GACACCGGCT CGTGGCCGTG GGCCGACCTT TACGCACACG CTTTGGTGCA GCAGAACCGC TACACCGAGG CCGACGAATT CCTCACCCGG CGGGAAAACC GCGTGGGACT GCGCCACAGC CGCTCCGAAC GGGCACGCTT GGCCGCCGCG CGCGGCAGGC TGCTCGGCGC CCAAGGTGAC CTCGACCGCG CCATAAACGC CTTCGACCGG GCGTTGACGT TGTTGGCGGA CCTGCCCCTG CGCTACGACC AGGCCCGGGT CAACTTCGCC TACGGACAGA CGCTGCGACG CGCGGGCAAA CGACGTGACG CCGACGTGGC GTTGTCCACG GCGCGCGAGT TGTTCGCGGG ACTCGGCGCG GCCACCTACG TGTCCCGCTG CGACCGCGAA CTCAAAGCGG GAGGCCAACC CGGGGCGCGC GCCGACACCG AACTCACCCC GCAGGAACAG GCCGTCTCCC AGTTGGTGGC GCGGGGGCTG TCGAACCGGG AAGTGGCCGC CGAACTGTAT GTGTCGACGA AAACGGTGCA ATACCACCTG ACCCGCATCT ACGCCAAGCT GGGCATCCGT TCCCGCGCGG AACTCGCCGC GCTGTGGGGG CGAGCAGGAC TCTGA
|
Protein sequence | MTERSSTLIG RDTVLAELRD QARRVGEHGS RFLLLTGVSG CGRTALVERF AAHHDGPVLR AVGASWETTR DYGIIDQLAP GAVDVSDPVA AAERFARHLA GLAGTVLVVV DDAHWADEAS LQTLASTVRH HPRLRLLVVA TAVEGDTRVP AGIGALLRRI ATVEIPVEPL TAAEVAAVAA SFGIVLSPPV ADTLCRHTGG RVRYVRELLR EVPRRTWSRF DPVLPAPAAV SARVRDLLAD CSDAARRFVG AVAVLGPAAA VREAAALAEL GDEEVLDAVD EACTAGLVVL TAHGPAEISP ADSLVRAAVL EIMGPAAAAR AYRRAADLVD DRVRRLRLLV AASFAPDQEL ADRLDAVAAE RAAEGAWAEA ASLFTDASRL TEDRLLRERR LTRAVDALIG SGDAFGAAAL VPEVESLRET PLRNAVLGYL AIVRGRAAEA EARLDRAWEL VNVDRDPDVA ALICQRHVLH ALVRCRPDEL VAWADRAVTL AGPDAPAGIE AAAIRGLGLA ARGRVEQAKA AYATLADRVR HGAQAQRVLM GRGWLDLTLD QVDDARAALE TAVPTTFSGG STRISLWARA WLARAQFLAG EWDDSLRTVA EAATLLDRTG IVLAGPLLHW TGATIHALRG QWRQAERQLR RIDAVPQEYE LMRLCACLAR AQIAEARADA AGVLRALRPL AQGWITTHLD DTGSWPWADL YAHALVQQNR YTEADEFLTR RENRVGLRHS RSERARLAAA RGRLLGAQGD LDRAINAFDR ALTLLADLPL RYDQARVNFA YGQTLRRAGK RRDADVALST ARELFAGLGA ATYVSRCDRE LKAGGQPGAR ADTELTPQEQ AVSQLVARGL SNREVAAELY VSTKTVQYHL TRIYAKLGIR SRAELAALWG RAGL
|
| |