Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_19080 |
Symbol | |
ID | 8387235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2027842 |
End bp | 2029173 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644975975 |
Product | arabinose efflux permease family protein |
Protein accession | YP_003133757 |
Protein GI | 257055925 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.297545 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.79631 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGACA CGGTTCACCG GAATTCCCGG GTTCAGCTAC GCCGAGCCGT CCTGTCCAGC TATCTCGGCA GTGTGATCGA GTACTACGAC TTCCTCCTCT ACTCGACGGT CTCCGCTCTG GTGTTCAACC GCGTGTTCTT CTCCGAGCTC GATCCCGTGG TCGGCACGGT GGCTAGCCTC GGAACCTTCG CCACGGGGTA TCTCGCCAGA CCGTTGGGCG GAGTCGTGTT CGGTCACTTC GGTGACCGGC TCGGTCGCAA ACGGATGCTG GTGATCACGA TGACGATGAT GGGCGTCGTC AGCACGCTCA TCGGACTGCT GCCCACGTAC GCGCAGATCG GCGTTTGGGC GCCCATCCTG CTGGTCGTGC TGCGCGTGCT CCAGGGCATC GCCATCGGCG GTGAGTGGGG CGGAGCGGTG CTGATGTCGG CCGAGCACGC CACCTCACGG CGTGGTTTGT GGGCGAGTTT CACGAACGCG GGTGCTCCCA GCGGCATGGT CCTGTCCACA GTGGTACTGG CACTGGTCTC CGGCGCGGTG AGCGAGCAAC AGTTCATCGA CTGGGGCTGG CGCATCCCCT TCCTGCTCAG CGCCCTGTTG CTGATCCTGG GGCTGTTCGT GCGGGCGAAG GTGGACGAGA CACCGGTCTT CGCCAGCGCC CGACCGAAGC GGTCGGAGTC GCTGCCGTTG CTGGAGGTCC TCCGGCACCA TCCCCGCAAT CTGCTGCTGG CCATCGGCAT CGGTTTCGGT GCCTTCGTGG TCCAGGCGAC GCTGACCACG TTCCTGCTGT CCTACGCGGT GGAGGCGGGG TTCACCCGAC AGACGGTGCT CAACGTGCTC GCGGTGTCCT CGGTGGGCGC GGTGCTCGGC ATCGTGGGCT TTTCGGCACT GTCGGACCGA ATCGGCCGCA GGCCGGTCGT GATCGCCGGT GCCATCGGGA TGGCGGTGGT GTCCTTCATC CTGTTCCCCC TGATCGACAC CGGCTCGGTC GTGTCGCTGA CGGTGGCCGT CGTCCTCGGC CAGTCAGTGG TCCACCCGGC CATGTACGGG CCGTTGGCGG CGCTGTACAC GGAGATGTTC GGCACCCGGA CGCGGTACAC GGGGGCCTCC CTCGGTTACC AGGTCTCCGC CACGGGAGCC GGTTTGGCGC CGGTGGTGTT CGCGAGTATG AGCGGCGGGG GAGTCTCCTC GTTGGCGATC TCCGCCCTCA TCGCCGCGAG TTGCGTGATC ACCGCTGTGT CCATCATGGC CACCAAGGAG AGCCATCGCG CCGAGCTGGG GGAACGACCC GATGCCACGG ACGCGCCGGG AGAGCCCGCG GTGCAGAGCT GA
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Protein sequence | MSDTVHRNSR VQLRRAVLSS YLGSVIEYYD FLLYSTVSAL VFNRVFFSEL DPVVGTVASL GTFATGYLAR PLGGVVFGHF GDRLGRKRML VITMTMMGVV STLIGLLPTY AQIGVWAPIL LVVLRVLQGI AIGGEWGGAV LMSAEHATSR RGLWASFTNA GAPSGMVLST VVLALVSGAV SEQQFIDWGW RIPFLLSALL LILGLFVRAK VDETPVFASA RPKRSESLPL LEVLRHHPRN LLLAIGIGFG AFVVQATLTT FLLSYAVEAG FTRQTVLNVL AVSSVGAVLG IVGFSALSDR IGRRPVVIAG AIGMAVVSFI LFPLIDTGSV VSLTVAVVLG QSVVHPAMYG PLAALYTEMF GTRTRYTGAS LGYQVSATGA GLAPVVFASM SGGGVSSLAI SALIAASCVI TAVSIMATKE SHRAELGERP DATDAPGEPA VQS
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