Gene Svir_18860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_18860 
Symbol 
ID8387213 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2004354 
End bp2005019 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content66% 
IMG OID644975953 
Producttranscriptional regulator, GntR family 
Protein accessionYP_003133735 
Protein GI257055903 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.0812431 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGTCG CCTCTCGTCA GCTCGAACAA GCGTCCGTCT CGCTGGCCGA CCGTGCCTAC 
GCCGCGCTCC AGGACAAACT GATCATGCTC GACATCCCAC CCATGGCCCC GATCGACGAC
GTCGCGGTGG CCGAGTCCCT CGGCGTGGGT CGCACACCGG TCCGGGAAGC GCTCAAACGC
CTCGAAGTCG ACCGGTTGGT GATCTCCTAT CCCCGTCGCG GCACCTTCGC CACCGCCGTG
GACATCACCG ACCTGGCCTA CATCTCCGAG ATCCGCGTGC AGTTGGAACC CCTCGCGGCC
CGTCGCGCCG CCGAGAACTC GAACGAAAAG ATCCGCGCGG AACTGGCCGA CCTCGCCGAC
AAGCTCCAGC ACAACGACAT CCGCAGTCTG GGGCGCAACG AGCTGATGCA CTGGGACCTG
CGTGTGCACC GCGCGATCTA TCGCGCCGCG GGGAACCCAC ACCTCGAGGA CACTCTGGTG
CGCTACAACA ACCTCGCCAC CAGGATCTTC TGCCTGTTCC TGGACCGGAT CACCCACTTC
GACCGGCACA TCGGTGAGCA CATCGGCCTG CTGCGGGCGA TCGCGAAAGG CGAAAGCACC
GAAGCCGAAC GTATCGCCCG TGACCACGTC ACCGGTTTCG AGGCGGCGAT CCGGGCGATC
GTCTGA
 
Protein sequence
MTVASRQLEQ ASVSLADRAY AALQDKLIML DIPPMAPIDD VAVAESLGVG RTPVREALKR 
LEVDRLVISY PRRGTFATAV DITDLAYISE IRVQLEPLAA RRAAENSNEK IRAELADLAD
KLQHNDIRSL GRNELMHWDL RVHRAIYRAA GNPHLEDTLV RYNNLATRIF CLFLDRITHF
DRHIGEHIGL LRAIAKGEST EAERIARDHV TGFEAAIRAI V