Gene Svir_17110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_17110 
Symbol 
ID8387043 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1761657 
End bp1762295 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content69% 
IMG OID644975787 
Producthypothetical protein 
Protein accessionYP_003133569 
Protein GI257055737 
COG category[S] Function unknown 
COG ID[COG1739] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00257] uncharacterized protein, YigZ family 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.46381 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGCAAGA CGATGCGGGT GATCGCCCGC GACGGGGAGC ACGAGGTCGA GATCCAGCGG 
TCACGGTTCC TGTGCACGGT GGCCCGGGTC TTTGACGTCG ACGACGCCTA CGCGGTGATC
TCGCGGGTGC GCAAGGCCGG CCCGAACGCC AACCACCACT GCTTCGCCAT GCGGATCGGC
GACCCGGAGA CCGGTGAGCT CACAGCCCGC AGCAACGACG ACGGCGAACC GTCGGGTACC
GCGGGCGTGC CCATGCTGGA AGTGCTGACC CGACGCGAGC TGACCGACGT CGTCGCGATC
GTGTCCCGCT GGTTCGGCGG TATCAAACTC GGTGCCGGGG GCCTGGTCCG CGCCTACTCC
GGTGTGCTGG CCGAGACGCT GGACATCGTC GGCGAACTCC GCCGGGTCCG CCACCGCGAA
CTGCTGCTGG CACTCCCCCA CGACCGCGCC GGACGTCTGG AGCACCAGCT ACGCAACTCG
CCGTACCGGC TGCAAGAGGT GGAGTACGGC GCCGACGTCA CGTTCACCGT CGCCGTCACC
GAGGACGCCG TGACGGATTT CAAGACCTGG CTGGCCGAAC ACACCGGTAC GACGGTCGAC
GTCATCGACG CCGGGCCCCG GGATCTCTAT CTGCCGTGA
 
Protein sequence
MGKTMRVIAR DGEHEVEIQR SRFLCTVARV FDVDDAYAVI SRVRKAGPNA NHHCFAMRIG 
DPETGELTAR SNDDGEPSGT AGVPMLEVLT RRELTDVVAI VSRWFGGIKL GAGGLVRAYS
GVLAETLDIV GELRRVRHRE LLLALPHDRA GRLEHQLRNS PYRLQEVEYG ADVTFTVAVT
EDAVTDFKTW LAEHTGTTVD VIDAGPRDLY LP