| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_16230 |
|---|
| Symbol | |
|---|
| ID | 8386956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 1669206 |
|---|
| End bp | 1670756 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644975701 |
|---|
| Product | ABC-type dipeptide transport system, periplasmic component |
|---|
| Protein accession | YP_003133485 |
|---|
| Protein GI | 257055653 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.884302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTTGACA CACCTCTACA GAGAAGATCT TTCCTGCTCG GTGCCCTGGC CACCGCGGCG
ACACCGGTGC TCGCCGCGTG CGGCGGTGCG TCAAGCGCCG CCACCGAACC CACCGGACCG
CCCCGCCGCG GTGGGAGGCT TCGGGTGGGG GTCACGGGCG GCGGCGCCTC CGACACACTC
GATCCCCACA TCCCCGCCAC CAACCCCGAC ATCGCTCGGG TGCGCAACCT GTACGAACCG
CTGGTCTACC GTGACCACGA CTACAAGCTC GAGATGCTGC TCGCCGAGTC GCTCACCTCG
TCCGAGGACG CGATGACGTG GACGGCGACG TTGCGCGAGG GCGTTCGGTT CTGCGACGGC
CGCCCGGTCA CCCCGGCCGA CGTGCGGGCC ACGTTCCGAC GCATCATGGA CCCCGACGAT
CCGAAGAGCG GCGCCGCCAG CCTCACGATG CTCGACGAGG TGGTACCCAC CGGCGACCGC
ACCGTGGAGT TCCGGCTCTC CGAGCCGTGC AGCGTGTTCG ACGACTACCT GGCCCAGTAC
TCGCTCGGCA TCGTGCCCGA GGACTTCTCG CTCGACCGGC CGGTGGGTAC GGGACCGTTC
CGGGTGCAGT CGTTCTCCCC CGGCTTGCAG AGTGTGTTCG TGCGCAACGA ACACTACTGG
CGCCCCGGCA GGCCTTATCT CGACGAACTC GTCCTCATCA ACTTCGGTGA GGACGACGCC
CGCATCAACG CGCTGCTTTC GTCGCAAGTG GATGCGATCG ACCAGGTACC GATGGCGTTG
GTGGAGGTGT TGCGCAGCGA CGATCGGCTG CGCATCCTCA GTTCGGAGAC GGGCACCTGG
CTCCCGTTCA CCATGCGGGT GGACCGTCCG CCGTTCGACG ATGTCCGGGT GCGCCAGGCA
CTCCGGCTGG TCGTCGACCG CGAACAGATG GTCAACCAGG TGCTCAGCGG ACAGGGCCGC
GTGGGAAACG ACCTGTACGC GCCGTTCGAC CCCGCCTACG CCTCCCACCT ACCCCAACGG
CGGCAGGATC TGGCCAAGGC TCGGAGTCTG CTGCGCGAGG CCGGACACCC ACAGCTGGAG
GTGGAACTGG TGACCGCGCC GATCCAGGCC GGCGCCGTCG AAGCGGCGCA GGTTTTCCAA
CAACAGGCCA AGGCGGCCGG AATAACAGTC CACTTACGAC GATTGGACAC CACCACCTTC
TTCGGGGAGA ACTATCTGAG CTGGGACTTC GCCCAGTCGT TCTGGTACAC CCGCAACTAT
CTGCCGCAGG TGGCCTCAGG CGCATTACCC GACGCGCCGT ACAACGAGAC CCACTGGGAC
GACGCCGAGT TCCAGGATCT TGTCGACCGT GCTCGTCGCA CCCTGGATGA GGCGGAGCGC
ACCGAACTGT TGCATGAGGC ACAGCGCATC GAGTACGAGC GCGGCGGCAA CATCATCTGG
GGCTTCGTCA ACCAGGTCGA CGCCCACCAG GTGTACGTCG CGGGCCTGGT CCCCGATCGC
ACGGGCCTGC CGCTGTCCGG TTACTCGTTC GGCGACGTCT GGCTCGGCTG A
|
|---|
| Protein sequence | MFDTPLQRRS FLLGALATAA TPVLAACGGA SSAATEPTGP PRRGGRLRVG VTGGGASDTL
DPHIPATNPD IARVRNLYEP LVYRDHDYKL EMLLAESLTS SEDAMTWTAT LREGVRFCDG
RPVTPADVRA TFRRIMDPDD PKSGAASLTM LDEVVPTGDR TVEFRLSEPC SVFDDYLAQY
SLGIVPEDFS LDRPVGTGPF RVQSFSPGLQ SVFVRNEHYW RPGRPYLDEL VLINFGEDDA
RINALLSSQV DAIDQVPMAL VEVLRSDDRL RILSSETGTW LPFTMRVDRP PFDDVRVRQA
LRLVVDREQM VNQVLSGQGR VGNDLYAPFD PAYASHLPQR RQDLAKARSL LREAGHPQLE
VELVTAPIQA GAVEAAQVFQ QQAKAAGITV HLRRLDTTTF FGENYLSWDF AQSFWYTRNY
LPQVASGALP DAPYNETHWD DAEFQDLVDR ARRTLDEAER TELLHEAQRI EYERGGNIIW
GFVNQVDAHQ VYVAGLVPDR TGLPLSGYSF GDVWLG
|
|---|
| |