Gene Svir_15780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_15780 
Symbol 
ID8386911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1620686 
End bp1622662 
Gene Length1977 bp 
Protein Length658 aa 
Translation table11 
GC content68% 
IMG OID644975656 
ProductExcinuclease ABC subunit C 
Protein accessionYP_003133440 
Protein GI257055608 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00194] excinuclease ABC, C subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.160684 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCGACC CTTCCACCTA CCGACCCGCC CCGGGGACCA TCCCGGACTC GCCCGGCGTG 
TACAAGTTCC GCGATGCCGG CGGACGGGTC ATCTACGTCG GCAAGGCCAA GAGCCTGCGT
AGCCGACTGA ACTCCTACTT CACCGATCTC GCCGGACTGC ATCCGCGTAC CCGGCAGATG
GTCACCACGG CCGCGAGCGT GGAGTGGACC GTGGTGAGCA CCGAGGTGGA GGCGCTGCAG
CTCGAATACA ACTGGATCAA GGAGTTCGAT CCTCGGTTCA ACGTCCGTTA CCGCGATGAC
AAGACGTACC CGGTGCTCGC GGTCACGTTG AACGAGGAGT TCCCGCGCCT GCACGTCTAT
CGAGGACCGC GGAAGAAAGG CGTGCGCTAC TTCGGCCCCT ACGCCCACGC CTGGGCCATC
CGGGAGACTC TCGACCTGCT GTTGCGGGTG TTCCCCGCAC GGACGTGTTC GACGGGGGTG
TTCCGCAGGC ACAGCCAGAT CGGCCGCCCG TGTCTGCTCG GCTACATCGA CAAATGTTCG
GCCCCGTGCG TCGGTGCGGT GTCGGCCGAA CGTCACCGCG AGATCGTCGA GGGTTTCTGC
GACTTCCTCT CCGGCCGCAC CGATCAGATG GTCCGCAAGC TGGAGCGGGA GATGGCCGAG
GCGTCCGAGG CGCTGGAGTT CGAGCGGGCG GCCCGGTTGC GGGACGACCT CGCCGCGCTG
CGCAAGGCCA TGGAGAAGCA GGCCGTGGTG TTGGGCGATG GCACCGACGC CGACGTCATC
GCGTTCGCGC ACGACGAGTT GGAGGCGGCC GTTCAGATCT TCCACGTGCG GGGCGGTCGG
GTCCGGGGCC AGCGTGGCTG GGTGATCGAC AAGGTCGAGG AGATGGACGT GTCCGACCTC
GTCGAGCAGT TCCTGTCGCA GTTCTACGCC GGTCAGGCCG AGCTGGCCGC CGAGACACCC
ACCGACGGGG TCGTCGTACC GCGTGAGGTG CTGGTGCCCG AGCTGCCGGC CAATGCCGAG
AGCATGGAGC AGTGGCTGTC GGAGTTGCGT GGTTCCCGGG TGCGGCTCCG CGTGCCGCAG
CGGGGGGACA AACGAACGCT GGCCGAGACC GTGGCCCGTA ACGCAGAGGA GGCGTTCTCG
CAACACAAGT TGCGTAGGGC GGGCGATCTC ACCGCTCGTT CGGCGGCCTT GTCGGAACTG
CAGGAGTACC TCGGGTTGGA CAGTGCCCCA CTGCGCATCG AATGCGTGGA CGTCAGCCAC
CTGGCCGGTA CCGACGTGGT CGCCTCGCTG GTGGTGTTCG AGGACGGGTT GCCCCGCAAG
TCGGAGTACC GGCGGTTCGC GCTGCGGGAA GCCGCCACCG AGGGGGACGT GGCCGCCATC
GCGGAGGTCG TCCGGCGCCG TTTCTCCCGA TACCTCAAGG AGACCCAGGC TCAGGGCGTT
GAGCGGGGCA CGGAGACGCC CGGGGTGAAT CAGGCACTGG ACCCCGAGAC GGGTAAGCCT
CGTAAATTCG CCTATCCGCC CAATCTGTTG GTCGTGGACG GTGCGGGGCC GCAGGCCACG
GCCGCGGCGG ACGTGCTGGC CGAGCTCGGT ATCACCGACG TCGCCGTGGT CGGACTCGCC
AAACGGCTGG AGGAGGTGTG GCTGCCCGCC GACGACAACC CGGTCATCCT GCCGAGGACG
TCGGACGCGC TGTACCTTCT GCAGCGAGTG CGTGACGAGG CGCACCGGTT CGCGATCCGC
TATCAGCGGC AGAAACGGTC GAAACGGGTA CAGGAGTCGG TGTTGGACGG GATCCCTGGA
CTGGGGCAGG TCCGGAAGGC CGCGTTGATC AAGCACTTCG GCTCGGTGAA GAAGATCCGA
GAGGCCACCG TGGCCGAGAT CGCGGCGGTG CCGGGCTTCG GTACCCGCAC AGCCGAGGTG
GTCCATGCCG CGCTCGCAGG GGGCCGGACT GACAGCAGAG GGGAGTCGCA GACGTGA
 
Protein sequence
MADPSTYRPA PGTIPDSPGV YKFRDAGGRV IYVGKAKSLR SRLNSYFTDL AGLHPRTRQM 
VTTAASVEWT VVSTEVEALQ LEYNWIKEFD PRFNVRYRDD KTYPVLAVTL NEEFPRLHVY
RGPRKKGVRY FGPYAHAWAI RETLDLLLRV FPARTCSTGV FRRHSQIGRP CLLGYIDKCS
APCVGAVSAE RHREIVEGFC DFLSGRTDQM VRKLEREMAE ASEALEFERA ARLRDDLAAL
RKAMEKQAVV LGDGTDADVI AFAHDELEAA VQIFHVRGGR VRGQRGWVID KVEEMDVSDL
VEQFLSQFYA GQAELAAETP TDGVVVPREV LVPELPANAE SMEQWLSELR GSRVRLRVPQ
RGDKRTLAET VARNAEEAFS QHKLRRAGDL TARSAALSEL QEYLGLDSAP LRIECVDVSH
LAGTDVVASL VVFEDGLPRK SEYRRFALRE AATEGDVAAI AEVVRRRFSR YLKETQAQGV
ERGTETPGVN QALDPETGKP RKFAYPPNLL VVDGAGPQAT AAADVLAELG ITDVAVVGLA
KRLEEVWLPA DDNPVILPRT SDALYLLQRV RDEAHRFAIR YQRQKRSKRV QESVLDGIPG
LGQVRKAALI KHFGSVKKIR EATVAEIAAV PGFGTRTAEV VHAALAGGRT DSRGESQT