Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_15780 |
Symbol | |
ID | 8386911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 1620686 |
End bp | 1622662 |
Gene Length | 1977 bp |
Protein Length | 658 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644975656 |
Product | Excinuclease ABC subunit C |
Protein accession | YP_003133440 |
Protein GI | 257055608 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.160684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCCGACC CTTCCACCTA CCGACCCGCC CCGGGGACCA TCCCGGACTC GCCCGGCGTG TACAAGTTCC GCGATGCCGG CGGACGGGTC ATCTACGTCG GCAAGGCCAA GAGCCTGCGT AGCCGACTGA ACTCCTACTT CACCGATCTC GCCGGACTGC ATCCGCGTAC CCGGCAGATG GTCACCACGG CCGCGAGCGT GGAGTGGACC GTGGTGAGCA CCGAGGTGGA GGCGCTGCAG CTCGAATACA ACTGGATCAA GGAGTTCGAT CCTCGGTTCA ACGTCCGTTA CCGCGATGAC AAGACGTACC CGGTGCTCGC GGTCACGTTG AACGAGGAGT TCCCGCGCCT GCACGTCTAT CGAGGACCGC GGAAGAAAGG CGTGCGCTAC TTCGGCCCCT ACGCCCACGC CTGGGCCATC CGGGAGACTC TCGACCTGCT GTTGCGGGTG TTCCCCGCAC GGACGTGTTC GACGGGGGTG TTCCGCAGGC ACAGCCAGAT CGGCCGCCCG TGTCTGCTCG GCTACATCGA CAAATGTTCG GCCCCGTGCG TCGGTGCGGT GTCGGCCGAA CGTCACCGCG AGATCGTCGA GGGTTTCTGC GACTTCCTCT CCGGCCGCAC CGATCAGATG GTCCGCAAGC TGGAGCGGGA GATGGCCGAG GCGTCCGAGG CGCTGGAGTT CGAGCGGGCG GCCCGGTTGC GGGACGACCT CGCCGCGCTG CGCAAGGCCA TGGAGAAGCA GGCCGTGGTG TTGGGCGATG GCACCGACGC CGACGTCATC GCGTTCGCGC ACGACGAGTT GGAGGCGGCC GTTCAGATCT TCCACGTGCG GGGCGGTCGG GTCCGGGGCC AGCGTGGCTG GGTGATCGAC AAGGTCGAGG AGATGGACGT GTCCGACCTC GTCGAGCAGT TCCTGTCGCA GTTCTACGCC GGTCAGGCCG AGCTGGCCGC CGAGACACCC ACCGACGGGG TCGTCGTACC GCGTGAGGTG CTGGTGCCCG AGCTGCCGGC CAATGCCGAG AGCATGGAGC AGTGGCTGTC GGAGTTGCGT GGTTCCCGGG TGCGGCTCCG CGTGCCGCAG CGGGGGGACA AACGAACGCT GGCCGAGACC GTGGCCCGTA ACGCAGAGGA GGCGTTCTCG CAACACAAGT TGCGTAGGGC GGGCGATCTC ACCGCTCGTT CGGCGGCCTT GTCGGAACTG CAGGAGTACC TCGGGTTGGA CAGTGCCCCA CTGCGCATCG AATGCGTGGA CGTCAGCCAC CTGGCCGGTA CCGACGTGGT CGCCTCGCTG GTGGTGTTCG AGGACGGGTT GCCCCGCAAG TCGGAGTACC GGCGGTTCGC GCTGCGGGAA GCCGCCACCG AGGGGGACGT GGCCGCCATC GCGGAGGTCG TCCGGCGCCG TTTCTCCCGA TACCTCAAGG AGACCCAGGC TCAGGGCGTT GAGCGGGGCA CGGAGACGCC CGGGGTGAAT CAGGCACTGG ACCCCGAGAC GGGTAAGCCT CGTAAATTCG CCTATCCGCC CAATCTGTTG GTCGTGGACG GTGCGGGGCC GCAGGCCACG GCCGCGGCGG ACGTGCTGGC CGAGCTCGGT ATCACCGACG TCGCCGTGGT CGGACTCGCC AAACGGCTGG AGGAGGTGTG GCTGCCCGCC GACGACAACC CGGTCATCCT GCCGAGGACG TCGGACGCGC TGTACCTTCT GCAGCGAGTG CGTGACGAGG CGCACCGGTT CGCGATCCGC TATCAGCGGC AGAAACGGTC GAAACGGGTA CAGGAGTCGG TGTTGGACGG GATCCCTGGA CTGGGGCAGG TCCGGAAGGC CGCGTTGATC AAGCACTTCG GCTCGGTGAA GAAGATCCGA GAGGCCACCG TGGCCGAGAT CGCGGCGGTG CCGGGCTTCG GTACCCGCAC AGCCGAGGTG GTCCATGCCG CGCTCGCAGG GGGCCGGACT GACAGCAGAG GGGAGTCGCA GACGTGA
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Protein sequence | MADPSTYRPA PGTIPDSPGV YKFRDAGGRV IYVGKAKSLR SRLNSYFTDL AGLHPRTRQM VTTAASVEWT VVSTEVEALQ LEYNWIKEFD PRFNVRYRDD KTYPVLAVTL NEEFPRLHVY RGPRKKGVRY FGPYAHAWAI RETLDLLLRV FPARTCSTGV FRRHSQIGRP CLLGYIDKCS APCVGAVSAE RHREIVEGFC DFLSGRTDQM VRKLEREMAE ASEALEFERA ARLRDDLAAL RKAMEKQAVV LGDGTDADVI AFAHDELEAA VQIFHVRGGR VRGQRGWVID KVEEMDVSDL VEQFLSQFYA GQAELAAETP TDGVVVPREV LVPELPANAE SMEQWLSELR GSRVRLRVPQ RGDKRTLAET VARNAEEAFS QHKLRRAGDL TARSAALSEL QEYLGLDSAP LRIECVDVSH LAGTDVVASL VVFEDGLPRK SEYRRFALRE AATEGDVAAI AEVVRRRFSR YLKETQAQGV ERGTETPGVN QALDPETGKP RKFAYPPNLL VVDGAGPQAT AAADVLAELG ITDVAVVGLA KRLEEVWLPA DDNPVILPRT SDALYLLQRV RDEAHRFAIR YQRQKRSKRV QESVLDGIPG LGQVRKAALI KHFGSVKKIR EATVAEIAAV PGFGTRTAEV VHAALAGGRT DSRGESQT
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