Gene Svir_13950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_13950 
Symbol 
ID8386728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1437114 
End bp1438820 
Gene Length1707 bp 
Protein Length568 aa 
Translation table11 
GC content64% 
IMG OID644975476 
Productcholine/carnitine/betaine transport 
Protein accessionYP_003133265 
Protein GI257055433 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.626795 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAAGA AGTTGGAACG GGTGCTCGGG TTGAAGACGA ACCCGTCGAT CTTCTTCAGC 
GCGGCGTTTT TGATCCTGGC CTTCGTCGTG GGGTCCATCC TGTTCACGGC GGAGGTGGAC
AGTGTCTTCC GGGCCGTGTC GAACGCGGTG AAGACGAATC TCGGCTGGCT CTACATCCTC
GGCGTGACGT CCTTTTTGCT CTTCCTGCTG TGGATCGCGT GCAGCCGTTA CGGCAACGTG
CGACTCGGCG GCAAGGACTC GCGGCCCGAA TACACCAACG TGACCTGGTT CGGCATGCTG
TTCGCCGCGG GCATCGGCTC GATCCTGATG TTCTGGGGCG TGGCCGAGCC CATCAACCAC
TTCGCGAACC CACCCTTCAG CGGCGCGCAC GCCCAGGTGG ACGCCTTGGC GGGGAGCATG
GGCAGTCCCC AGGACTTCGC CAAACGACTC GGCGAGATGC CCGTGAGTCC GGGCGCGACC
GCGCCTTTGA GCGAGAACGC CGCCAACGAG GCGATCGGCT TCGCGCTCTA CCACTTCGGC
CTGCACACGT GGTCGATCTT CTCGCTGCCC GCCCTGGCCT TCGCCTACTT CGCGTACAAG
CGAGGCCTCC CGTTCCGGGT GAGCTCCATC TTCCACCCGC TCCTCGGCAA CCGGATCAAC
GGTCCGCTCG GCCGGGTCAT CGACACCGTG GCCGTGATCG GCACGCTGTT CGGTGTCGCC
GTCTCCGTCG GCCTCGGCAC GCTGCAGATC AACAGCGGCC TGAACGAGCT GTTCGGTGTG
GAGGTCAGCG GAGTGGTCCA AATCCTGATC ATCGCGGTGG TGACCACCTT CGCGACGATC
TCCGTGGCGA CCGGCCTGGA CAAGGGCATC AAATGGCTGT CCAACATCAA CATCGGGATG
GCCGTCGCGT TGTTGCTGTT CATCCTCTTC ACCGGCTCGA CGGTGTTCCT GCTGCGCGGC
GTGATCGAAA GCACCGGCAC CTATCTGAGC ATGTTGGTGC CGCTGTCGTT CTGGAATGAC
GCGCTTCCTG CAGGGGACTG GGGCTGGCAG GGCACCTGGA CGGTGTTCTA CTGGGCGTGG
ACCATCACCT GGGCGCCGTT CGTCGGTATC TTCGTCGCCC GCATCTCCAA GGGCCGCACG
ATCCGCGAGT TCGTCCTCGG CGTGCTGGGC TCGCCGGTGG CGTTCTCCGT CGTCTGGTTC
AGCATCTTCG GGATGTCGTC CATCAACATC GAATGGAACG AACCCGGCTC GCTGATCGGC
CCGGTGGTGC AGGAAGGTGA CACGGCCGCC GCGCTGTTCA CCTTCCTGGA GCACTTCCCG
GCCCCCGAGT TCATGATGGG GTTCTCGGTG CTCATTGTGA TCATCTTCTT CACCACGTCC
GCCGACTCGG CCTCGCTGGT GGTGGACATG CTGACCTCGG GTAACACGAC CAATCCCCCG
GTGCGGCAGC GCATTTTCTG GGCGGTGTTG GGCGGCACGG TCGCCGCCAC GCTGATCGCC
GCCACCGGGC AGGAGGCGCT GCAGGCGTTG GAACAGGTCA TCACCGTGAT CGGGCTGCCG
TTCTTCATCA TCGCGTTCGC GATGATGTAT TGCCTGGTCA AGGCGCTGAG GAAGGACATC
CCCGAGGAAG AGCTCCTGTC GCCCCGCGCC CGGTCACTGT TGGAACGGGA ACGCAAGAGG
CGCGAGGCGG AACCGGAGCC GGACTGA
 
Protein sequence
MLKKLERVLG LKTNPSIFFS AAFLILAFVV GSILFTAEVD SVFRAVSNAV KTNLGWLYIL 
GVTSFLLFLL WIACSRYGNV RLGGKDSRPE YTNVTWFGML FAAGIGSILM FWGVAEPINH
FANPPFSGAH AQVDALAGSM GSPQDFAKRL GEMPVSPGAT APLSENAANE AIGFALYHFG
LHTWSIFSLP ALAFAYFAYK RGLPFRVSSI FHPLLGNRIN GPLGRVIDTV AVIGTLFGVA
VSVGLGTLQI NSGLNELFGV EVSGVVQILI IAVVTTFATI SVATGLDKGI KWLSNINIGM
AVALLLFILF TGSTVFLLRG VIESTGTYLS MLVPLSFWND ALPAGDWGWQ GTWTVFYWAW
TITWAPFVGI FVARISKGRT IREFVLGVLG SPVAFSVVWF SIFGMSSINI EWNEPGSLIG
PVVQEGDTAA ALFTFLEHFP APEFMMGFSV LIVIIFFTTS ADSASLVVDM LTSGNTTNPP
VRQRIFWAVL GGTVAATLIA ATGQEALQAL EQVITVIGLP FFIIAFAMMY CLVKALRKDI
PEEELLSPRA RSLLERERKR REAEPEPD