Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_13950 |
Symbol | |
ID | 8386728 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 1437114 |
End bp | 1438820 |
Gene Length | 1707 bp |
Protein Length | 568 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644975476 |
Product | choline/carnitine/betaine transport |
Protein accession | YP_003133265 |
Protein GI | 257055433 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.626795 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAAGA AGTTGGAACG GGTGCTCGGG TTGAAGACGA ACCCGTCGAT CTTCTTCAGC GCGGCGTTTT TGATCCTGGC CTTCGTCGTG GGGTCCATCC TGTTCACGGC GGAGGTGGAC AGTGTCTTCC GGGCCGTGTC GAACGCGGTG AAGACGAATC TCGGCTGGCT CTACATCCTC GGCGTGACGT CCTTTTTGCT CTTCCTGCTG TGGATCGCGT GCAGCCGTTA CGGCAACGTG CGACTCGGCG GCAAGGACTC GCGGCCCGAA TACACCAACG TGACCTGGTT CGGCATGCTG TTCGCCGCGG GCATCGGCTC GATCCTGATG TTCTGGGGCG TGGCCGAGCC CATCAACCAC TTCGCGAACC CACCCTTCAG CGGCGCGCAC GCCCAGGTGG ACGCCTTGGC GGGGAGCATG GGCAGTCCCC AGGACTTCGC CAAACGACTC GGCGAGATGC CCGTGAGTCC GGGCGCGACC GCGCCTTTGA GCGAGAACGC CGCCAACGAG GCGATCGGCT TCGCGCTCTA CCACTTCGGC CTGCACACGT GGTCGATCTT CTCGCTGCCC GCCCTGGCCT TCGCCTACTT CGCGTACAAG CGAGGCCTCC CGTTCCGGGT GAGCTCCATC TTCCACCCGC TCCTCGGCAA CCGGATCAAC GGTCCGCTCG GCCGGGTCAT CGACACCGTG GCCGTGATCG GCACGCTGTT CGGTGTCGCC GTCTCCGTCG GCCTCGGCAC GCTGCAGATC AACAGCGGCC TGAACGAGCT GTTCGGTGTG GAGGTCAGCG GAGTGGTCCA AATCCTGATC ATCGCGGTGG TGACCACCTT CGCGACGATC TCCGTGGCGA CCGGCCTGGA CAAGGGCATC AAATGGCTGT CCAACATCAA CATCGGGATG GCCGTCGCGT TGTTGCTGTT CATCCTCTTC ACCGGCTCGA CGGTGTTCCT GCTGCGCGGC GTGATCGAAA GCACCGGCAC CTATCTGAGC ATGTTGGTGC CGCTGTCGTT CTGGAATGAC GCGCTTCCTG CAGGGGACTG GGGCTGGCAG GGCACCTGGA CGGTGTTCTA CTGGGCGTGG ACCATCACCT GGGCGCCGTT CGTCGGTATC TTCGTCGCCC GCATCTCCAA GGGCCGCACG ATCCGCGAGT TCGTCCTCGG CGTGCTGGGC TCGCCGGTGG CGTTCTCCGT CGTCTGGTTC AGCATCTTCG GGATGTCGTC CATCAACATC GAATGGAACG AACCCGGCTC GCTGATCGGC CCGGTGGTGC AGGAAGGTGA CACGGCCGCC GCGCTGTTCA CCTTCCTGGA GCACTTCCCG GCCCCCGAGT TCATGATGGG GTTCTCGGTG CTCATTGTGA TCATCTTCTT CACCACGTCC GCCGACTCGG CCTCGCTGGT GGTGGACATG CTGACCTCGG GTAACACGAC CAATCCCCCG GTGCGGCAGC GCATTTTCTG GGCGGTGTTG GGCGGCACGG TCGCCGCCAC GCTGATCGCC GCCACCGGGC AGGAGGCGCT GCAGGCGTTG GAACAGGTCA TCACCGTGAT CGGGCTGCCG TTCTTCATCA TCGCGTTCGC GATGATGTAT TGCCTGGTCA AGGCGCTGAG GAAGGACATC CCCGAGGAAG AGCTCCTGTC GCCCCGCGCC CGGTCACTGT TGGAACGGGA ACGCAAGAGG CGCGAGGCGG AACCGGAGCC GGACTGA
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Protein sequence | MLKKLERVLG LKTNPSIFFS AAFLILAFVV GSILFTAEVD SVFRAVSNAV KTNLGWLYIL GVTSFLLFLL WIACSRYGNV RLGGKDSRPE YTNVTWFGML FAAGIGSILM FWGVAEPINH FANPPFSGAH AQVDALAGSM GSPQDFAKRL GEMPVSPGAT APLSENAANE AIGFALYHFG LHTWSIFSLP ALAFAYFAYK RGLPFRVSSI FHPLLGNRIN GPLGRVIDTV AVIGTLFGVA VSVGLGTLQI NSGLNELFGV EVSGVVQILI IAVVTTFATI SVATGLDKGI KWLSNINIGM AVALLLFILF TGSTVFLLRG VIESTGTYLS MLVPLSFWND ALPAGDWGWQ GTWTVFYWAW TITWAPFVGI FVARISKGRT IREFVLGVLG SPVAFSVVWF SIFGMSSINI EWNEPGSLIG PVVQEGDTAA ALFTFLEHFP APEFMMGFSV LIVIIFFTTS ADSASLVVDM LTSGNTTNPP VRQRIFWAVL GGTVAATLIA ATGQEALQAL EQVITVIGLP FFIIAFAMMY CLVKALRKDI PEEELLSPRA RSLLERERKR REAEPEPD
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