Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_13860 |
Symbol | |
ID | 8386721 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 1428340 |
End bp | 1430838 |
Gene Length | 2499 bp |
Protein Length | 832 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644975469 |
Product | CRISPR-associated helicase Cas3 |
Protein accession | YP_003133258 |
Protein GI | 257055426 |
COG category | [R] General function prediction only |
COG ID | [COG1203] Predicted helicases |
TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.234704 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.222328 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGCGC CCTGGGGGAA ACGGCGCGGG CTTGAAGCTG CTGACGGCAG CCCGCGCGAA TATCCGCTCG TCTGCCACCT CTGCGACACC GCCGCCGCCG CGCTCGTGCT CTGGGAGGAC CACACCGCGC CCGGTGTCCG CGAGTGGGTT GCCAACGAAC TCGACATGAC CCCACACGAG GCAGGACGGT TCATTGCCTA CCTCGCCGGA CTGCACGACA TCGGTAAAAC CACCCCTGGT TTCCAGTGTC AGGACAGCAC TGACAAAAAC AGCGTCGACA CAATCCGGCA CGAGATCGCG AGCTATCTGG CCGTGCCCAC ACTCATCGAG CACCCCGAAA AGCCAGCCTC GTTCATCTCA GGTATCGCGC ACCGGATCGG GGAAATCCTC GGCGGCCACC ACGGCGTCTT CCCACCCGTC GACCGCCGCA CCCGCAAACC GTTACACGTA CCTGAACTCG GCGGCCCCGA GTGGGACACC GCACGGCGCA CTATCCACAC CGAACTGAGA GCTCACCTCA ACCCCACCCT GCCCACATGC CTGCCGCAGC CTGTCGCAGC AGCGCTCACC GGGCTGGTGA TCGTGGCCGA CTGGATCGTC TCCGATGCCC GCTGGATCCT CGAATCACAG TGGGACGCTC CCATCGGTAT CGCCGCGCGC TGGGAACACA CCCTGAACGC CACCCGCGCC CGTGTCCACC AGCTCGGGCT CGCCCACCCC ACCCCCGGAC CGCTGGATCT CGCCCGGATC CTCGGCGGCC CCAACCGGTC CCCGAACCCG CTCCAGCAGT CGATCATCGA CGACTTCCAC CCCACCGGGC CCGGCCTGTT AACGATCGCC ACCCCCACCG GGTCCGGGAA AACCGAAACC GCGTGGATCG CCGCCCACAA ACTCGCCACC GCCACCGACA GGTACGGCAC CCTCATGTGC CTACCCACGC AGGCCACCAC GAACTCGATG TGGGCCCGCA CCAGCGCCAC CGTCGACAAC ACGGTCACCC TCGCCCACTC CATGGCCGTG TTCCACAGCC CCTACCGCCA CTACTCCACC CACGACCCCG ACGCGTTGCG GTGGCTCAAC GGCAGGAAAC GCCCGATGCT GTCCGCCCAC GCGGTCGTCA CCATCGACCA ACTCCTCGCC GCCGGGCTCA CCGCGAAACA CAACATGGTC CGCCAATGGG CGCTCACCGG CAAGGTCGTG ATCGTGGACG AGGTCCACGC CTGCGATATC TACATGCTCA CCGTTCTCGC CCGCGTCCTT GAATGGTTGG GCCGCCTGGG CGTGCCGGTA GTGCTGCTGT CAGCGACGCT TCCTGGGCAT GTGTCGCGGC AGCTCACCGC CGCCTACCTC ACCGGTGCAG GATGCTCATC CCCGAACCCT CGCCCTGTGG CCTACCCGGG TTGGGTGTGG CACCCCATCA CCGGTAGCCC GGTCGAACCA CGGAACCGAG CACAAATCAG CAGAGCGCAC GCTCGCACCG CCCGCGTCAC CGTCACCCAC TACACCGGCC CCGTCGAGGC CGCCGCCGCC AACGCCATCC AGCCCGTCGC TAAAAACGGC GGGTGCGCAG CAGTGGTGTG CTCCACCGTC GACACCGCCC AACGCATCTA CATCCGGATT CGCGACACCT ACCCCGGCAT GTGCGTGTGG CTGCTGCATT CCCGGTTCCC CCACGCCCAC CGCGCTGAGA TCGAAGCCGA CATTGTGTCG ATGTTCGGCC CAGCCGGCGA CCGCCCGGAC GGAGTTGTGG TGGCCACCAG CGTCATCGAG CAGTCCCTCG ATGTCGACTT CGACGTGATG ATCTCCGAAC TCGCCCCGGT GGCGTTGCTG TTCCAGCGCC TCGGACGCGT GTGGCGGCAT GACAATCCCC GCCCCGCGTG GGCCACCGAA CCCACCCTCC ACATCCTCGA CCGTGACGGG GCACTGCCAT ACGGCCCGGC CGCGATCTAC CGCGACTCCC TGCGCGAACT CCGCGCCACC CGAGCTGCGC TCGCCGGCCA CGGAACCCTG ATTCGGATCC CTGAGGACGT GTCCACGCTC GTGCAGCAAG TCCACAACCG CGACCTCGAT GATCTTAACG ACCTCCAGTC TCAGCGGGAA CGCCGTGACG CCGGATTGGC CAACATCGTC GCCATCCCCA ACCCCCACCA GCTCGGTCAC CTGGAAACAA TGACCTGCCC CGACGTCGAC GACGCCACCG TGGCCGCCCG CCTAGGCATG GACACCATTC GCCTCATCCC CGCCCACATC GGAATCGACG GCCGCTACTA CCTCGACCCC AAACACGAAA TCCCCTACCC ACAAGGCCGT CCACCACACC GGTTCGTTGA AGCCGCGCTC AACGCGAGCA TCACCTGCCC CGCCCACTGG GTGCGTGACT GGCCCACCAA CCCCGACTGG GCGGGCACCC ACCTCGCCGA CACTGTGCTG TTCCCCAACA CCTGCCATGA CGGGCTGCGC CTGGACCCCG AACTCGGCCT CGTGAAAGGA AACCAGTGA
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Protein sequence | MQAPWGKRRG LEAADGSPRE YPLVCHLCDT AAAALVLWED HTAPGVREWV ANELDMTPHE AGRFIAYLAG LHDIGKTTPG FQCQDSTDKN SVDTIRHEIA SYLAVPTLIE HPEKPASFIS GIAHRIGEIL GGHHGVFPPV DRRTRKPLHV PELGGPEWDT ARRTIHTELR AHLNPTLPTC LPQPVAAALT GLVIVADWIV SDARWILESQ WDAPIGIAAR WEHTLNATRA RVHQLGLAHP TPGPLDLARI LGGPNRSPNP LQQSIIDDFH PTGPGLLTIA TPTGSGKTET AWIAAHKLAT ATDRYGTLMC LPTQATTNSM WARTSATVDN TVTLAHSMAV FHSPYRHYST HDPDALRWLN GRKRPMLSAH AVVTIDQLLA AGLTAKHNMV RQWALTGKVV IVDEVHACDI YMLTVLARVL EWLGRLGVPV VLLSATLPGH VSRQLTAAYL TGAGCSSPNP RPVAYPGWVW HPITGSPVEP RNRAQISRAH ARTARVTVTH YTGPVEAAAA NAIQPVAKNG GCAAVVCSTV DTAQRIYIRI RDTYPGMCVW LLHSRFPHAH RAEIEADIVS MFGPAGDRPD GVVVATSVIE QSLDVDFDVM ISELAPVALL FQRLGRVWRH DNPRPAWATE PTLHILDRDG ALPYGPAAIY RDSLRELRAT RAALAGHGTL IRIPEDVSTL VQQVHNRDLD DLNDLQSQRE RRDAGLANIV AIPNPHQLGH LETMTCPDVD DATVAARLGM DTIRLIPAHI GIDGRYYLDP KHEIPYPQGR PPHRFVEAAL NASITCPAHW VRDWPTNPDW AGTHLADTVL FPNTCHDGLR LDPELGLVKG NQ
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