Gene Svir_13060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_13060 
Symbol 
ID8386642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1342485 
End bp1343279 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content68% 
IMG OID644975390 
Producttranscriptional regulator, IclR family 
Protein accessionYP_003133180 
Protein GI257055348 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID[TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCAG GTAGTGGACG TGCCGCGCAC CACGTGCAGT CCCTCGAACG CGGACTGGCG 
GTGATCAAGG CGTTCGGCGC GGGCGCCCCG CAACTCACGC TCAGTGAGGT GGCGAAGGAG
ACCGGGTTGA CGCGGGCCGC GGCACGCCGG TTCCTGCTGA CGTTGGCCGA TCTCGGTTAC
GTCCGTTCCG ACGGCAGGTA CTTCAGCCTC ACCGCCAAGG TCCTCGAACT GGGGTACGCG
TACCTGTCGA GCCTGTCTCT GCCCGAGGTG GTGCAGCCGC ACCTGGAGCG GTTGTCGGCG
GAGGTGCACG AGTCCTGTTC GGTCTCGGTG CTCGACGGAA CCGACATCGT CTACGTCGCT
CGGGTGGCGG TGTCGCGCAT CATGACCGTG AGCATCAACG TGGGCACCCG TTTCCCCGCC
CACGCCACTT CCATGGGGCG GGTGCTGCTC GCCGGACTCG ACGAGGACGC ACTCGCCGAT
TACCTGCGTG AGGTGACGTT CGACCGGTTG ACCGACCACA CGATCACCTC GGCCGAGAAG
CTGCGGGCCG AACTGGACGC CGTGCGCGAG CAGGGGTGGG CGCTGGTCGA TCAGGAGTTG
GAAGAGGGGC TGCGGTCCGT GGCCGCTCCC ATCCGAGACA GGTCTGGCAA GGTGGTGGCC
GCCGTGAACA TCTCCACGCA CGCCAGCCGG ACGACACCCG AGTCGGTGCG TACCGGTCTG
GTCCCGCCGT TGTTGGCGAC GGCGGCGCGG ATCGAGTCCG ATCTGGCCGT CGCCCCCGCG
GCGCAGGTCT CATGA
 
Protein sequence
MEAGSGRAAH HVQSLERGLA VIKAFGAGAP QLTLSEVAKE TGLTRAAARR FLLTLADLGY 
VRSDGRYFSL TAKVLELGYA YLSSLSLPEV VQPHLERLSA EVHESCSVSV LDGTDIVYVA
RVAVSRIMTV SINVGTRFPA HATSMGRVLL AGLDEDALAD YLREVTFDRL TDHTITSAEK
LRAELDAVRE QGWALVDQEL EEGLRSVAAP IRDRSGKVVA AVNISTHASR TTPESVRTGL
VPPLLATAAR IESDLAVAPA AQVS