Gene Svir_12110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_12110 
Symbol 
ID8386548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1247892 
End bp1248236 
Gene Length345 bp 
Protein Length114 aa 
Translation table11 
GC content63% 
IMG OID644975297 
Productpredicted membrane protein 
Protein accessionYP_003133087 
Protein GI257055255 
COG category[S] Function unknown 
COG ID[COG3162] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.185749 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTACCA CCGAATCCGA GGCACGTCCG CCCGGGGCAC AGTCCTGGGC GGAGGTCCAC 
GCGAGCGAGG ACTTCCAGCG ACTGCGCAGC CGACTGCGGC GGTTCGTCTT CCCCATGACC
GCGCTCTTCC TTGTCTGGTA CCTGACCTAC GTCGTGGTGG CGGACTACGC GCACGACTTC
ATGGCCATCA AGGTCGTCGG CAACATCAAC ATCGGTCTGA TCTTCGGCCT GCTGCAGTTC
GTGTCGACGT TCGCGATCAC GGCCCTCTAC ATCCGCTACG CCAACCGCAA GCTCGACCCG
ATCGCCGACC GGATCAGGAA GAACATGGAA GGGGACGAGT CGTGA
 
Protein sequence
MSTTESEARP PGAQSWAEVH ASEDFQRLRS RLRRFVFPMT ALFLVWYLTY VVVADYAHDF 
MAIKVVGNIN IGLIFGLLQF VSTFAITALY IRYANRKLDP IADRIRKNME GDES