Gene Svir_12100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_12100 
Symbol 
ID8386547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1246297 
End bp1247895 
Gene Length1599 bp 
Protein Length532 aa 
Translation table11 
GC content66% 
IMG OID644975296 
ProductSSS sodium solute transporter 
Protein accessionYP_003133086 
Protein GI257055254 
COG category[R] General function prediction only 
COG ID[COG4147] Predicted symporter 
TIGRFAM ID[TIGR00813] transporter, SSS family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.24513 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCACCC TCGCCCAGAG CATCGAGGGC AACAATCCCG TCCTCAACAT CACCATCTTC 
GCGCTGTTCG TCATCGTGAC GCTGGTCGTC GTCTTCCGGG CCTCACGGAA CACCAAGACC
GCCTCGGACT ACTACGCGGC GGGCCGTTCC TTCTCCGGAC CGCAGAACGG CACCGCCATC
GCGGGCGACT ACCTGTCGGC GGCGTCGTTC CTGGGTATCG CGGGCGCGAT CGCCGTGTAC
GGCTACGACG GCTTCCTCTA CTCGATCGGA TTCCTCGTCG CCTGGCTGGT CGCGTTGTTG
CTGGTCGCCG AACTGCTGCG GAACACGGGC AAGTTCACCA TGGGCGACGT ACTCGCCTTC
CGGATGCGGC AACGCCCGGT CCGGGCCGCG GCGGCGACGT CCACGATGGC CGTGTCGTTC
TTCTACCTCC TCGCCCAGAT GGCGGGTGCG GGAGCACTCG TATCGCTGCT GTTGGGCATC
GACAGCGACT TCGGACAGGC CGTCGTCATC TGCGTGGTCG GCGTCGTCAT GATCCTGTAC
GTGCTCGTCG GTGGGATGAA GGGCACGACC TGGGTGCAGA TCATCAAGGC CGCGCTCCTC
ATCGCGGGCA CGTTCGCGAT GACGGTGTGG GTTCTGGGCC ACTACGGACT GAACTTCTCC
GAACTCCTCG GGGCCGCCGT CGAACGGTCA CCGGACGGCG AGTCCATGCT GAACCCGGGC
GCGAAGTACG GCGTGAGCGA GGCCTCGAAG ATCGACTTCT TGTCGTTGGG CATCGCGCTC
GTGCTGGGGA CCGCGGGCCT GCCGCACGTC CTCATGCGCT TCTACACCGT GCCCACCGCC
AAGGACGCCC GCAAGTCGGT GGTCTGGGCC ATCGCCCTGA TCGGCCTGTT CTACCTGTTC
ACCCTGGTCC TCGGCTACGG CGCCGCGGCC ATCGTCGGGT CCGACACGAT CAGCAACGCG
CCCGGCGGCG AGAACTCGGC CGCGCCACTG CTGGCGGAGG CTTTGGGCGG CCCCTTGCTG
CTCGGGTTCA TCGCGGCCGT GGCGTTCGCG ACGATCCTGG CGGTGGTGGC GGGTCTGACG
ATCACCGCAT CGGCGTCCTT CGCGCACGAC GTGTACGTCA ACGTCATCAA GCGGGGCAAG
GCCGACAACA AGAACACCGA GGTCAAGGTC GCACGTATCA CGGCCTGCGT GATCGGGGCC
GTGGCGATCA TCGGCGGCAT CCTGGCCAAG GACCAGAACG TGGCGTTCCT CGTGGCGCTG
GCGTTCGCGG TCGCCGCGTC GGCGAACCTG CCGACGATCC TGTACTCGCT GTTTTGGAAG
CGGTTCAACA CCTCCGGCGC GCTGTGGTCG ATCTACGGCG GTCTGACGGT CACCCTCGTG
CTGATCGTGT TCTCGCCCGC CGTGTCGGGT ACCGAGAAGT CGATGATCAC AAGCGTCGAC
TTCCACTGGT TCCCGCTGCA GAACCCGGGC CTGGTGTCGA TTCCGGTGTC GTTCTTCCTC
GGTTGGTTGG GCACCGTGTT GTCGAAGGAA CACCTGGAGG ACAAGCACAA GGAGATGGAG
GTGCGTTCCC TCACCGGCGC GGGTGCCGAG AAGGACTGA
 
Protein sequence
MTTLAQSIEG NNPVLNITIF ALFVIVTLVV VFRASRNTKT ASDYYAAGRS FSGPQNGTAI 
AGDYLSAASF LGIAGAIAVY GYDGFLYSIG FLVAWLVALL LVAELLRNTG KFTMGDVLAF
RMRQRPVRAA AATSTMAVSF FYLLAQMAGA GALVSLLLGI DSDFGQAVVI CVVGVVMILY
VLVGGMKGTT WVQIIKAALL IAGTFAMTVW VLGHYGLNFS ELLGAAVERS PDGESMLNPG
AKYGVSEASK IDFLSLGIAL VLGTAGLPHV LMRFYTVPTA KDARKSVVWA IALIGLFYLF
TLVLGYGAAA IVGSDTISNA PGGENSAAPL LAEALGGPLL LGFIAAVAFA TILAVVAGLT
ITASASFAHD VYVNVIKRGK ADNKNTEVKV ARITACVIGA VAIIGGILAK DQNVAFLVAL
AFAVAASANL PTILYSLFWK RFNTSGALWS IYGGLTVTLV LIVFSPAVSG TEKSMITSVD
FHWFPLQNPG LVSIPVSFFL GWLGTVLSKE HLEDKHKEME VRSLTGAGAE KD