Gene Svir_11050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_11050 
Symbol 
ID8386442 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1136321 
End bp1137397 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content66% 
IMG OID644975195 
Productmonosaccharide ABC transporter membrane protein 
Protein accessionYP_003132988 
Protein GI257055156 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.543201 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGAGA CGCTCGACCG ACCGCCGACG CGGGCCCGGA GCGCGGGCGC GCGACGTCGA 
CAAGCCGTCG ACGTGCGGCT CCTCGGACTG ACGGGCGTGT TGGTGCTGCT ATGCCTCATC
GGCTTCATCA CCAACCCCGA CACGTTCCTC ACTCAGGACA ACATCTCCAT CATGCTTCGG
CTCGCCGCGG CGATCGGCGT GGTGAGTGTC GGCATGACCT TCGTCATCAT CGCCGGGGGC
ATCGACCTGT CCGTCGGGTC GATCGTGGCG TTGGCGAGCG TCTGGATGAC CACGGTGGCC
ACGCAGTCGT ACGGCCCGGT CGTGATGGTG CTGTGCGCGC TCGCCGTGGG ACTGGGCTGC
GGCCTGGTCA ACGGGCTGCT GATCTCCTAC GGCAAGGTCG TCCCGTTCAT CATGACCCTG
GCGATGATGG CCTCGGCTAA GGGACTGGCC GAGCGCATCA GTGACCGGCG CACCCAGGTG
GTGACCGAAA CGGGGTTCAC CGAATTCTTC CGCGGCAGCT TCCTCGGCAT CCCGGTGCTG
GTGTGGTTGC TGGCCCTGGT GTTCGCCGTC GGTTGGCTCG TGCTCAACCG GACCACGTTC
GGCCGGAGGA CGTACGCCAT CGGCGGTAAC GCGGAGGCCG CGCGACTGTC GGGGATCAAC
GTCAAACGAC ACACCGCCTT GGTGTACGGC ATCAGCGGAC TGTGTTGCGG CATCGCAGCG
ATCATGGTGG TGGCTCGGAC GACGTCCGGG GCCTCGACCA ACGGACTGTT CTACGAACTC
GACGCCATCG CGGCCGTCGT CATCGGCGGC ACCCTGCTCT CGGGCGGGCG CGGCAGTCTC
CTCGGGACAC TCGTCGGTGT TCTGATCTTC ACGGTCCTCA ACAGCATCTT CACGCAGAAC
AACCTCGACA CCGACATCCA GAACATCGCC AAGGGCGCGA TCATCGTCGT CGCCGTGCTG
CTGCAGAACA CCGCCCGGCA ACGCAAGGAC AAGGGCAAGG GCACCTCCCC GCCCCCTGCG
GCCCCGCAGG AGCCTTCCCC CGACCCGGCA ATCGAAACCA GTGGGAGTAA GCCATGA
 
Protein sequence
MTETLDRPPT RARSAGARRR QAVDVRLLGL TGVLVLLCLI GFITNPDTFL TQDNISIMLR 
LAAAIGVVSV GMTFVIIAGG IDLSVGSIVA LASVWMTTVA TQSYGPVVMV LCALAVGLGC
GLVNGLLISY GKVVPFIMTL AMMASAKGLA ERISDRRTQV VTETGFTEFF RGSFLGIPVL
VWLLALVFAV GWLVLNRTTF GRRTYAIGGN AEAARLSGIN VKRHTALVYG ISGLCCGIAA
IMVVARTTSG ASTNGLFYEL DAIAAVVIGG TLLSGGRGSL LGTLVGVLIF TVLNSIFTQN
NLDTDIQNIA KGAIIVVAVL LQNTARQRKD KGKGTSPPPA APQEPSPDPA IETSGSKP