| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_09160 |
|---|
| Symbol | ddl |
|---|
| ID | 8386253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 940944 |
|---|
| End bp | 942041 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644975007 |
|---|
| Product | D-alanyl-alanine synthetase A |
|---|
| Protein accession | YP_003132801 |
|---|
| Protein GI | 257054969 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.616014 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGCC GTAAGACCCG AGTGGCCGTC GTCTTCGGCG GTCGAAGCAC CGAGCACACC
ATTTCCTGTG TGTCGGCGGG CAGCATCATG GCGAACCTCG ATCCCGACCG GTTCGAGGTC
GTCCCCATCG GTATCACCCA GGAAGGTGGC TGGGTACTCG GCACGAACGA CCCCGAACAG
TTGCGCATCA AAGGCAGGGA ACTGCCCGTC GTCGAACACG GGAAGACACT GGTGCTCGCC
GGCGACCCCA CGACGGGTGG TGTGCTGAGC CTGACAGCCG GAGAACCCGC CGAGGTGTTG
TCCGGGGTGG ATGTGGTGTT CCCCGCATTG CACGGTGCTT TCGGCGAGGA CGGCACCATT
CAGGGCCTGC TGGAGCTGGC CGACATCCCC TATGTGGGTT CCGGCGTGTT CGCCAGTGCG
GCCGCCATGG ACAAGGAATA CGCCAAGAAA CTGCTCGCCG CCGAGGGACT GGAGGTCGGC
CGCTACGCCG TGGTCCGACG CGGCCAGGAC ACCCTGCCCG CCGAGGAACG GGAACGCCTC
GGCCTGCCCG TGTTCGTCAA ACCCGCGCGC GCCGGGTCGT CCATCGGCAT CTCCCGGGTG
ACCGATTGGT CGCAATTGGA CGCCGCCATC GCGCATGCCA GACAGACCGA CCCCAAGGTG
CTCGTGGAGG CCGAGACCGT GGGAAGGGAA GTCGAGTGCG GGGTGCTCGA ATTCGCCGAC
GGCAGGGTGG AGGCGTCGTT CCCCTCCGAG ATCCGCGTGC TGTCCGACGA CGCCGACGCC
TGGTACGACT TCGAGACCAA ATACCTCGGT GAGGACGCCG AACTCGACAT CCCCGCCAAA
CTCGACGACA CGATCACCGA ACGCCTCCGC GACATGGCCG TGCGTGCTTT CACCGCGCTC
GAGTGCCAGG GGCTGGCCAG GGTGGACTTC TTCGTCGGTC CCGACGGCAC CCTCACCGTC
AACGAGGTCA ACACGATGCC CGGGTTCACC CCCACCTCGG CCTACCCGAA GATGTGGGAG
GTCACCGGGA TCGACTATCC GACGTTGCTC ACCACGCTCG TGGAGACCGC GCTCGCCCGC
GGCACCGGGT TGCGCTGA
|
|---|
| Protein sequence | MSSRKTRVAV VFGGRSTEHT ISCVSAGSIM ANLDPDRFEV VPIGITQEGG WVLGTNDPEQ
LRIKGRELPV VEHGKTLVLA GDPTTGGVLS LTAGEPAEVL SGVDVVFPAL HGAFGEDGTI
QGLLELADIP YVGSGVFASA AAMDKEYAKK LLAAEGLEVG RYAVVRRGQD TLPAEERERL
GLPVFVKPAR AGSSIGISRV TDWSQLDAAI AHARQTDPKV LVEAETVGRE VECGVLEFAD
GRVEASFPSE IRVLSDDADA WYDFETKYLG EDAELDIPAK LDDTITERLR DMAVRAFTAL
ECQGLARVDF FVGPDGTLTV NEVNTMPGFT PTSAYPKMWE VTGIDYPTLL TTLVETALAR
GTGLR
|
|---|
| |