| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_08820 |
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| Symbol | |
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| ID | 8386219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 903132 |
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| End bp | 907589 |
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| Gene Length | 4458 bp |
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| Protein Length | 1485 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644974973 |
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| Product | Rhs family protein |
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| Protein accession | YP_003132769 |
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| Protein GI | 257054937 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0271193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGG CGTACAGCGA GGTCGAGAAC CCACTGGAGA TACTCGGCCA GGATCCCGGC
CTGTCCGGCG GTTCGTCGAT CGAGGACGCG ATCAAAAACG CCGGCTTCCA GGTGCAGGCC
GTCAACTGGG TGTGGCAGAA GATCGTGGGC GAGGACCTCG TGTCCTCGAT CATCACGCCG
ATCACCGGTG ACTTCGAGAA GATCGCGGCC GCCGCGGCGC AGTGGAACAA CGTGTGCGCC
GCGTTGCAGG CGGTGCGTAA GAACATCAAC GCCGGTGCGG AGGAACTGCA GCCCTCCTGG
TCGGGGCCGG CGGCGGAAAG CTTCGCCAAT CTGATCGGCA TCACCTGGAC CGTGGGGCTG
GAAGCGGACG CCCAGGCCGC GAAGTTGATC GGCGTTGCGC TGAGCAAGGT CGCCGACGGC
TCCAAACGCG CCTGCGATCA GGTGCTGAAA CTGATCGAGC GCCTGGTCAA CAAGCTGATC
GAAGCGGCGG CGATGCTGCC GATCCCGGTG GTCGGCTGGG GCCGTGCCGT CAAGCTCGTC
TACGACGGCA TCCAGATCTA CAACGCCATC ATGGACCTGA TCGAGGGCAT CAAGTCGATC
ATCGACGGAG CCACGCAGGT CGTCAACGGG ATCATGGATG TGGGCACGGC GCTGTCCAAG
TTGGGCAGCG CGGACAGCAT CAGCGACCTG ATGAACGTCG CGAACGACGT GCACAAAGGC
GTCACCGACA TCAGGGACGG CGGAAGCCAG ATCAGGGACG GCGCGACGCA GGCCTCCAGC
GCGGCGGGGG ATCTCCGCAC CTCGACGTCC AGCGCCTCGG AGAACGCTCG GGGACTCGTC
GACGAACGCG CGAGCGCACG CGAACAGAAC ACCGCTTCCA GCAGCAGCAC GGACACGGCC
ACATCCGGCA CCGGCAACGG AAACCGACCC GGCAGAAGCA ACGCGCTGCA GCACTCCGGT
GGCGACGGCG AGGGCCTAGC GCGACCGCAG GACCCGGAGA CCACCCGGAC ACCGGAACAG
AACCGGGTCT GTGAGAACGA CCCCGTGGAC GTGTCCTCCG GTGAGGTCGT GCTGAGCCAG
ACCGATGTCG AACTTCCCGG AGCCTTGCCG CTGGTGATCA AACGCACGCA TGTGTCGTCC
TACCGTGCGG GTCGCTTCTA CGGCCGCTCC TGGGCGTCGA CGTTCGATCA ACGACTGGAG
TTCGACGACG ACGGCGTCGT GTTCGTCGCC GACGACGGCA TGGTCCTGGT CTATCCCCGG
GTCCCCGAGG AGGGCGAAGT ACTTCCCGTC ACCGGCCCGC GATGGACCTT GGCCGCCACG
GCCGATGGCT GGTGCGTCAC CGACCGTACG TCCGGCCGGA TACTGCATTT CGCGGCGGGG
GACAATCCCG TCCGTCGGTT GACCGCCGTC ACCGACCGGA ATGGCAACCG CTTCGACCTC
GATCGCGATG CCGTCGGCTG TGTCACCGCC GTCCGGCACA GCGGCGGTTA CCACATCGAG
GTCGACACTG ACCGGGACCG CATCACCGAA CTGCGGCTTC GTCACAGGGC CGAGGCAACG
GCCACGACCC GGCTCGTCCG CTACCGCTAC GACGATGCCG GCCTGTTGGC CGAAGTGGTC
AACTCGTCCG GACGGTCTTT GCGGTTCTCC TACGACGATC AGTCACGGCT CGTCCGGTGG
ACCGACCGAA ACGGACACTG GTACCACTAC TTCTACGACG ACGCCGGCCG CTGCGTCGCC
AACCACAGCT CCAGCAAGTA CCTCAGCGGC ACGTTCTCCT ACGACCCCGA CAACCGAATC
ACCCGGTTCA CCGACGCTCT CGGCCACAGC ACCGTTTACC AGCTCGACGC CAAGGGCAAC
GTCATCGCGG AGACCGACCC GCTCGGACAC ACCACGACCA GCGAATGGGA CGAGCACAAC
AGGCTGATCT CCCGCACGGA CCCGCTCGGC CGCACCACTC GCTACAGCTA CGACGACGAC
GGCAACCTCA CCGGCGTCAG CGGACCGGAC GGCACACAGT CGCGCGCCGA GTACAACGAG
TGGGGCCTGC CCACCTCCGT GGTCGATCCC GACGGCGCGG TGTGGCGGCA GTCCTACGAC
GAGCGGGGCA ACCGGGTGTC CCTCACGGAT CCGACCGGTG CGACGACCCG CTACTCCTAC
GACGAGCGGG GCAACGCGAC CGCCATCACC GACGCGCTCG GCCAGACCCG CCGTATCGAG
TACGATCCCG CCGGATTGCC GCTCGCGGTG ACGGACCCCT CAGGGGCGAC ACGACGCTTC
GAACGGGACC ACTTCGGACG CATCACGGCG ATCATCGACG AAGTGGGTGC CGTCACGCGC
TTCGGCTGGA CCGTCGAAGG CAAACGGGCG TGGCGGACCC TGCCGGACGG CACCACCGAA
CGGTGGGAAT ACGACGGCGA AGGCAACGAG ATCGCGTACG TGGGTCCCTC GGGGCTGACG
AGGCGGATCA GCTACACCCA GTTCGACCTT CCCGTCTCGG TCACCGATGC GGAAGGCAAC
ACCCTCACCT ACACCTACGA TCCGCTGCTT CGCTTGACCG CGGTCACCAA CGCGCACGGC
CTGACGTGGC GCTATGAACG GGACGCCGCG GGCAACGTGG TGCGCGAGAT CGACTACGAC
GGCCGGGAGA TCCGCTACTT CTACGACGCG GCCGGGCAGT TGACGAGCAG GGTCAACGGT
GCGGGAGAGA CGACCACGTT CCGCAGGGAT CTCTCCGGCC GGGTCGTCGA ACGACGCGCC
CAGGACAGGG TGTCGACCTT CGAGTACGAC CCGATGGGCA GGATGCTGTC CGCGACCAGT
CCCGACGCCA CCGTGCGTTA CCGGCGAGAC GCGCGTGGCC GGGTGCTCAG CGAGCAGATC
AACGGCCACA CGGTGACGTC TCGTTACGAC GCGTTGGGAA GACGGGTCCA CCGCCGCACG
TCGACCGGGG TCGAGAGCAC ATGGTCCTAC GACGTCCGAG GGTGTCCTCG GGAACTCCGG
ATGGCGGACC GGATGATCAC ATTCGGTTTC GATGGGGCGG GCCGTGAGAT CGAACGCCGA
CTCGACAACG GCGCCACGAT CGCACAGCAA TGGGACCGCA ACGGCCGCCT GATCGACCAA
TCGATCTCGA TCGCCGACGG AACACCGACG GTGCCCCCGC GCTACCGGCT GCTGCAGCAG
CGGTCGTACC GCTACGGACC GGACGGCTCC CCACAGGCCG TGGACGACAC ATCCACCGGC
ACGGTGCGGC TCCAACTCGA CGGAACCGGG CGGGTGAGGC AGGTGGCCGG CCCGGGCGGA
CAGGAACAGT ATTCCTACGA CCGCGCGGGC AACATCCGGA ACGCGAGCTG GCATACGCCG
AGCGGCCATG GCCAACACTC GTATGCCTAC GACGGCACCA GATTGACCAC CGCGGGCAAC
GTCCGATACA CCTACGACCG GCAAGGTCGC GTCGTCACCA AAGTGCGGTA CGAGGCGGGC
GGGACAACGC TCCGGTGGCA CTACACCTGG AACGCCGAGG ATCGCCTGGT GGAGGTCGGC
ACGCCGGACG GTTCCCGCTG GCGCTACCTC TACGACGCCC TCGGCAGGCG TATCGCCAAG
CACAAGCTCG CACCCGACGG CTCCACCGTC GTGGAACGCA CCGAGTTCAT CTGGGACGGC
GTGCGACTCG CCGAGCAGGT ACTCGCGGGC GTCGACGCGA CGACATGGGA ATGGCATCCT
CGCCGGTTCC GGCCCCTCAC CCAGATCCGG CGCCGGTTGT CCCCCGCGAA GCAGTGGGTC
GGCGGCGACT TCCACGCGGT GATCACCGAC GGCATCGGCA CGTCGACGGA GCTGTTGGAC
GGCTCCGGCA ACCTCGCGTG GCGCAACCGC ACCACGCTCT GGGGGAAAAC GGTCATCAAG
CACCACGGCA GTGCGTCGAC GCCGTGGCGT TTCCCCGGCC AGTACAGCGA TCCGGAGACC
GGGCTCCACT ACAACTACCA CCGCTACTAC GACCCGGACA CCGGACGCTA CGTCTCGTGC
GACCCGCTCG GGCTCAGACC GTCCCCGAAC CACTACGCGT ATGTGGTGAA TCCGCTGCGG
TGGCTCGACC CGCTCGGGCT CATGAGTTGT GGCGACGACG ACGCGGTGAC CCTCTACCGC
AACGTCGACG GCAGGGAGTT CGACGCGATC GCCGAGACCG GCCGCTTCGA ATCCGGAGGT
GGGAGTTCGG AAGGCAAGTG GTTCGCGCTC CACGGGGAAC ATGCCGACCG GTGGGGAGAG
GTGCTCAACC AGGGTGACGG TGTGACGATG GAGACCAACG TTCCGTCGTC CGTGGTCGAT
GGCCTGCATC GGCATCCAGG TGACAACCTG GACGGCATCG GGCCCGCTGT GTACGCCGAC
GCCGATCAGC TCGAGCAGAT CAACCAGCAA GGCGATGGAA TCAGGATCTG GGAAGGTAGT
AACAGCGGAC ATGCTTGA
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| Protein sequence | MTAAYSEVEN PLEILGQDPG LSGGSSIEDA IKNAGFQVQA VNWVWQKIVG EDLVSSIITP
ITGDFEKIAA AAAQWNNVCA ALQAVRKNIN AGAEELQPSW SGPAAESFAN LIGITWTVGL
EADAQAAKLI GVALSKVADG SKRACDQVLK LIERLVNKLI EAAAMLPIPV VGWGRAVKLV
YDGIQIYNAI MDLIEGIKSI IDGATQVVNG IMDVGTALSK LGSADSISDL MNVANDVHKG
VTDIRDGGSQ IRDGATQASS AAGDLRTSTS SASENARGLV DERASAREQN TASSSSTDTA
TSGTGNGNRP GRSNALQHSG GDGEGLARPQ DPETTRTPEQ NRVCENDPVD VSSGEVVLSQ
TDVELPGALP LVIKRTHVSS YRAGRFYGRS WASTFDQRLE FDDDGVVFVA DDGMVLVYPR
VPEEGEVLPV TGPRWTLAAT ADGWCVTDRT SGRILHFAAG DNPVRRLTAV TDRNGNRFDL
DRDAVGCVTA VRHSGGYHIE VDTDRDRITE LRLRHRAEAT ATTRLVRYRY DDAGLLAEVV
NSSGRSLRFS YDDQSRLVRW TDRNGHWYHY FYDDAGRCVA NHSSSKYLSG TFSYDPDNRI
TRFTDALGHS TVYQLDAKGN VIAETDPLGH TTTSEWDEHN RLISRTDPLG RTTRYSYDDD
GNLTGVSGPD GTQSRAEYNE WGLPTSVVDP DGAVWRQSYD ERGNRVSLTD PTGATTRYSY
DERGNATAIT DALGQTRRIE YDPAGLPLAV TDPSGATRRF ERDHFGRITA IIDEVGAVTR
FGWTVEGKRA WRTLPDGTTE RWEYDGEGNE IAYVGPSGLT RRISYTQFDL PVSVTDAEGN
TLTYTYDPLL RLTAVTNAHG LTWRYERDAA GNVVREIDYD GREIRYFYDA AGQLTSRVNG
AGETTTFRRD LSGRVVERRA QDRVSTFEYD PMGRMLSATS PDATVRYRRD ARGRVLSEQI
NGHTVTSRYD ALGRRVHRRT STGVESTWSY DVRGCPRELR MADRMITFGF DGAGREIERR
LDNGATIAQQ WDRNGRLIDQ SISIADGTPT VPPRYRLLQQ RSYRYGPDGS PQAVDDTSTG
TVRLQLDGTG RVRQVAGPGG QEQYSYDRAG NIRNASWHTP SGHGQHSYAY DGTRLTTAGN
VRYTYDRQGR VVTKVRYEAG GTTLRWHYTW NAEDRLVEVG TPDGSRWRYL YDALGRRIAK
HKLAPDGSTV VERTEFIWDG VRLAEQVLAG VDATTWEWHP RRFRPLTQIR RRLSPAKQWV
GGDFHAVITD GIGTSTELLD GSGNLAWRNR TTLWGKTVIK HHGSASTPWR FPGQYSDPET
GLHYNYHRYY DPDTGRYVSC DPLGLRPSPN HYAYVVNPLR WLDPLGLMSC GDDDAVTLYR
NVDGREFDAI AETGRFESGG GSSEGKWFAL HGEHADRWGE VLNQGDGVTM ETNVPSSVVD
GLHRHPGDNL DGIGPAVYAD ADQLEQINQQ GDGIRIWEGS NSGHA
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