Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_06070 |
Symbol | |
ID | 8385945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 621009 |
End bp | 622553 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644974704 |
Product | cell envelope-related function transcriptional attenuator common domain protein |
Protein accession | YP_003132505 |
Protein GI | 257054673 |
COG category | [K] Transcription |
COG ID | [COG1316] Transcriptional regulator |
TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.974325 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0563121 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGACAAGG GTGAGAAGCG CCCTACCACC GAGGGCGAGG AACACGAGGG AGCTTCGCCC GGCCAGATCG AGTCCGAACA TGGGCCCGAC GCGCGGTCCG ATTCCGACGG CGGCATGATC CCCGATCGAA GCGACACCGA CGCGGCCGAC ACCGACTCCC ACCCCGGAAG CGACGACAGC GAGAACAGCG ACAGGGACCA CGACGGCGAC GACGGTGACG GCGCTGGCAG TGGTCCCGGC GCGCGAACCG AACCGGAGAC CGCCGAGGAA ACCGGGGAAT CCGGGGCGGG GGAATCCGCT CGAGGGCCCG CCGAGGAGCC GGACGCCGCG AGCAGAGCCC CGACCCGTGG ACGGGGTCGC AACCGCGGCC GGAAAGCCGC GAAGGCCCTG GTCCGTTCGG TGGGCGCTCT GCTGTCGGTG ATCGCGCTGG CCATCACCGG CTACGCCTAC TCCACGCTGG ACACCCTCCA GGACAACGTC AACACCACCG ACGCGTTGCG GCAGAACGAC GAACCGGACG ACGGCGAACC CCCACCGCCT CCCGAGGACG ACGGCGCCAC CGACATCCTG CTCGTGGGTA CCGATGCGCG CACCGACATG GAGGGCAATC CCCTCCCGCC GCACGTACTC AGACAACTGC GCACCGAGAA CAAGCCCGGC ATCAGCACGG ACACCCTGAT CCTGCTGCGG ATCCCGCACG ACGGCGCGCC CCCGACCGGG ATCTCGATTC CCCGCGACAC CTGGGTCGCG GTGTCCGGCG ACGAACACGC CAAGATCAAT TCGGTGTACG GCACGGAGAA GTACCGGACC GCCAACGAAC TACGCCGGGA AGGCGTCACC GATCGCTCCG AAGTGGAACG CCGATCCGAC CAGGCGGGCC GTGCGGCGCT GGTGCGCACG GTGCAGGAAT TCACCCAGGT CCGCATCGAC CACTACGCCG AGGTGAACCT CTTCGGTTTC TACCTGATCA CCGAGGCACT CGACGGCGTG GAGGTGTGTC TCAACCACGC CACGTTCGAC ACCGACTCCG GTGCCAATTT CGCGGCCGGA CGGCAGACCG TCTCCGGCGG GGAGGCGCTG TCGTTCGTAC GGCAACGCAA CAATCTGCCC CGCGGTGACC TCGACCGGAT CCAGCGGCAA CAGGCGTTCT TGGCGTCCGC GCTCAACAAG GTGTTGTCGG CGGGCACTCT CACCGACACC GGCAAGTTGA AGAAGCTGGC CAACGCCCTG CGACGCTCGC TGGTCCTGGA CTCCGACCTG GACCTGCTGA AGTTCGCCAG GCAAACCCGC GGGATCGCGT CGGGGGACTT CTCGTTCGTC ACGATCCCCG TCGTCGACAT CGCCGCGTGG AGCCCGGACG GGAAGCAGAG CATCGTGCAG GTCGACGTGG AGGAAGTACG GAAGTTCATC GCCGGTGTCG TGGAGCAGGG CGACGGACGA GGCCGGGACG ACCGGACGGC GGGGGAACGA CCTTCCGGGG GTGGATCGGC ACCGCAGAAC GACGGCACAA AGATCACCGC CGACGGCGTG ACGTGTGTGA ACTGA
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Protein sequence | MDKGEKRPTT EGEEHEGASP GQIESEHGPD ARSDSDGGMI PDRSDTDAAD TDSHPGSDDS ENSDRDHDGD DGDGAGSGPG ARTEPETAEE TGESGAGESA RGPAEEPDAA SRAPTRGRGR NRGRKAAKAL VRSVGALLSV IALAITGYAY STLDTLQDNV NTTDALRQND EPDDGEPPPP PEDDGATDIL LVGTDARTDM EGNPLPPHVL RQLRTENKPG ISTDTLILLR IPHDGAPPTG ISIPRDTWVA VSGDEHAKIN SVYGTEKYRT ANELRREGVT DRSEVERRSD QAGRAALVRT VQEFTQVRID HYAEVNLFGF YLITEALDGV EVCLNHATFD TDSGANFAAG RQTVSGGEAL SFVRQRNNLP RGDLDRIQRQ QAFLASALNK VLSAGTLTDT GKLKKLANAL RRSLVLDSDL DLLKFARQTR GIASGDFSFV TIPVVDIAAW SPDGKQSIVQ VDVEEVRKFI AGVVEQGDGR GRDDRTAGER PSGGGSAPQN DGTKITADGV TCVN
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