| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_05340 |
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| Symbol | |
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| ID | 8385872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 538818 |
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| End bp | 540191 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644974631 |
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| Product | endo-1,4-beta-xylanase (glycosyl hydrolase family 10) |
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| Protein accession | YP_003132435 |
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| Protein GI | 257054603 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.536878 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACGG CACATCAAAG GCGATCCGGG CTCCGACGGG CCGGGACCCG GATCAGGAAA
GTCGTCGCTG CGGTCGCGGT CGGTGCGGTG ACCGCGGGTG GGCTCGTCGC CGCCGCCGGC
ACGGCGAGTG CACAGACCAC TCTCGGTGAC GCCGCCGCAG CACAGGGCCG TTACTTCGGC
ACCGCGGTCG CGGTCGACAG ACTCGGCGAA CCCGACTACA CGGCCACGCT CAACCGGGAG
TTCAACAGCA TCACCGCCGA GAACTCATGG AAGTGGGAGA GCCTCCAACC CTCACCCGGA
TACTTCGACT TCAGCACCGC CGACCGCATC GCCGAACACG CGCGCCAGCA AGGCATGGAA
CTGCGCGGAC ACACCCTGGT CTGGCATTCA CAGTTGCCCA GCTGGGTTGA GAACATCGGG
TCCGCCGACG AACTCCGGGC GGTGATGCGC AATCACATCA CCACCGTGAT GGAGCACTAC
AAGGGACAGG TCCGCTCCTG GGACGTGGTG AACGAGGCGT TCGAGGACGG CAACAGCGGC
GCCCGTCGCA ACTCGGTGTT CCAGCGTGTC CTCGGTGACA GCTGGATCGA GGAGGCGTTC
TGGATCGCCC GCGAGGCCGA CCCGAACGCC ACGCTCTGCT ACAACGACTA CAACACCGAC
GCCTGGAACA CGGCGAAGAC GCAGGCCGTG TACAACATGG TGGCCGACTT CGTCAGCCGT
GGCGTGCCGA TCGACTGTGT CGGTTTCCAG GCTCACTTCA ACAGCGGCAA CCCGGTGCCG
GAGAACTACC ACATCACCCT GCAGAACTTC GCCGACCTCG GGGTGGAGGT CCAGCTCACC
GAGCTGGACA TCGCGGGATC GGGCGCGTCC CAGGCGGAAC AGTACGCCGG CGTCACCCTG
GCCTGCCTGG CCGTGCCCCA GTGCACCGGC ATCACGGTCT GGGGGGTGAC CGACAAGTAC
TCCTGGCGCG CGGAGGACAC GCCGTTGCTG TTCGACGGCA ACTACAACCC CAAGCAGGCC
TACTACGCCG TGCTGGAAAC CCTCGGCGGT TCCGGCGGCG GAGGCGGTGG TGACGGCGCC
TGCACCGTGA CCTACGAGGA GACCGAGCGG TGGGGCGACC GGTTCAACGG CCGGGTCACC
GTCCGCGCGG GCGATGAGGC GATCAGCTCG TGGAGCACCA CCGTCACCGT GCACCCGCCG
CAGCGGATCT CGGCGACCTG GAACGGCGAT CCGAGTTGGG ATGCCAGCGG CAACGTCATG
ACGATGCGGT CGAACAGTGG TCTACCCGCG GGTGGACAGA CGAGCTTCGG TTTCACCGTC
ATGGCGAACG GTAACTGGAC GGCACCGATC CTGGGTTCCT GTGTCGCCTC CTGA
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| Protein sequence | MSTAHQRRSG LRRAGTRIRK VVAAVAVGAV TAGGLVAAAG TASAQTTLGD AAAAQGRYFG
TAVAVDRLGE PDYTATLNRE FNSITAENSW KWESLQPSPG YFDFSTADRI AEHARQQGME
LRGHTLVWHS QLPSWVENIG SADELRAVMR NHITTVMEHY KGQVRSWDVV NEAFEDGNSG
ARRNSVFQRV LGDSWIEEAF WIAREADPNA TLCYNDYNTD AWNTAKTQAV YNMVADFVSR
GVPIDCVGFQ AHFNSGNPVP ENYHITLQNF ADLGVEVQLT ELDIAGSGAS QAEQYAGVTL
ACLAVPQCTG ITVWGVTDKY SWRAEDTPLL FDGNYNPKQA YYAVLETLGG SGGGGGGDGA
CTVTYEETER WGDRFNGRVT VRAGDEAISS WSTTVTVHPP QRISATWNGD PSWDASGNVM
TMRSNSGLPA GGQTSFGFTV MANGNWTAPI LGSCVAS
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