Gene Svir_04180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_04180 
SymbolsecY 
ID8385756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp408482 
End bp409789 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content61% 
IMG OID644974518 
Productpreprotein translocase subunit SecY 
Protein accessionYP_003132322 
Protein GI257054490 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0201] Preprotein translocase subunit SecY 
TIGRFAM ID[TIGR00967] preprotein translocase, SecY subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.132635 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCAGCG CCTTCCGCTC GGCTCTCGCG ACGCCGGACC TGCGCAAGAA GATCCTGTTC 
ACGCTGATGA TCGTGGCCAT CTACCGGATC GGTGCGGTCA CTCCAGCGCC CGGGGTTTCG
TACCCGAACG TTCAGGCATG CCAGGCGCAG GTCGAGGATC AGAACATCTT CTCGCTGCTG
AACCTATTCA GCGGTGGGGC GCTTTTGCAG CTGTCGGTCT TCGCCACCGG CATCATGCCT
TACATCACGG CGAGCATCAT CGTTCAGCTG CTCACGGTGG TGATCCCCCG TTTCGAGGAG
CTCAAGCGGG AAGGCCAGGC AGGCCAGGGC AAGCTCACGC AGTACACGCG GTACCTCACG
ATTGCTCTGG CGGTCCTCCA GGCGACCGGT GTTGTGGCGC TTGCTGACCG CGGTCAGCTG
TTCGCCAATT GTGACCAGCC CGTGTTGCCT GACAACAGCG TGTACTCGCT GACGCTGACG
GTGCTGACGA TGACCGCGGG CACGGCCGTG ATGATGTGGC TGGGCGAGCT CATCACCGAG
CGCGGCGTCG GCAACGGTAT GTCGCTGCTG ATCTTCCTGA ACATCGCCGC GCAGATCCCC
ACCGAGGGCG CCAACATCCT GAGCAGCCAG GGTGGTCTGA CGTTCTTCTT CATCTGCCTG
CTGGCGTTGG CGATCATCGC GAGCGTCATC TTCGTGGAGC AGGGGCAGCG GCGGATCCCC
GTCCAGTACG CGAAGCGGAT GATCGGCCGT CGTATGTACG GCGGCACGTC CACTTATCTG
CCGATCAAGG TGAACCAGGC CGGTGTCATC CCGGTCATCT TCGCGTCGTC GTTGTTGTAC
CTGCCTGACC TCATCGGGCA GCTCGTCGGC GACCCGAACC AGGCGTCGGG TTGGCAACGG
TTCCTGCAGA ACTACGTGTC TGATCAATCG CACTGGGTGC ACATCACCCT GTACTTCGCG
ATGATCATGT TCTTCACGTA CTTCTACATC ACCATCACGT TCAACGTGGA CGACCGCGCG
GAGGAGATGA AGAAGTTCGG CGGCTTCATC CCCGGCATCC GTCCTGGTCG TCCCACTGCC
GAATACCTTG GTTTCGTGCT CAACAGGATC ACCCTGCCGG GCTCGATCTA CCTCGGTATC
GTCGCGATCC TGCCTAACTT CTTCCTGTCG GTGACCGGCG AGGGGAACAA CCAGAACTTC
CCGTTCGGCG GAACAGCTGT GTTGATCATG GTCGGTGTCG GGCTTGACAC CGTGAAACAG
ATCGAGAGCC AGCTCATGCA GCGTAACTAC GAAGGGTTCC TCCGATGA
 
Protein sequence
MLSAFRSALA TPDLRKKILF TLMIVAIYRI GAVTPAPGVS YPNVQACQAQ VEDQNIFSLL 
NLFSGGALLQ LSVFATGIMP YITASIIVQL LTVVIPRFEE LKREGQAGQG KLTQYTRYLT
IALAVLQATG VVALADRGQL FANCDQPVLP DNSVYSLTLT VLTMTAGTAV MMWLGELITE
RGVGNGMSLL IFLNIAAQIP TEGANILSSQ GGLTFFFICL LALAIIASVI FVEQGQRRIP
VQYAKRMIGR RMYGGTSTYL PIKVNQAGVI PVIFASSLLY LPDLIGQLVG DPNQASGWQR
FLQNYVSDQS HWVHITLYFA MIMFFTYFYI TITFNVDDRA EEMKKFGGFI PGIRPGRPTA
EYLGFVLNRI TLPGSIYLGI VAILPNFFLS VTGEGNNQNF PFGGTAVLIM VGVGLDTVKQ
IESQLMQRNY EGFLR