| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_03800 |
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| Symbol | rpoB |
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| ID | 8385718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 376383 |
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| End bp | 379895 |
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| Gene Length | 3513 bp |
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| Protein Length | 1170 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644974480 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003132284 |
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| Protein GI | 257054452 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCCGG AAGGACGCAT CTTGGCAGTC TCTCCCGCGA ACCAGGCCAG TGCTGCGACC
AACTCGAATC GACCGTCAAC GGGTATTCCA GGAGCACCGA AGCGAGTCTC TTTCGGGGAG
ATTCGCGAGC CACTCGGTAT TCCGAACCTG CTTGACGTGC AGATTCAGTC CTTCGAGTGG
TTCACCGGCT CCGAGGCATG GTACGAGCGC GCCGTCAATG AGGGTGAGGA GAACCCGGTC
GGCGGTCTCG AGGAGGTCCT GAACGAGATC TCCCCGATCG AGGACTTCTC CGGATCGATG
TCCCTGTCCT TCTCCGACCC ACGCTTCGAC GAGGTCAAGG CCTCCGTCGA GGAGTGCAAG
GACAAGGACA TGACCTATGC GGCGCCCTTG TTCGTCACCG CTGAGTTCGT CAACCACAAC
ACCGGTGAGA TCAAGAGCCA GACGGTCTTC ATGGGCGACT TCCCCGTGAT GACCGACAAG
GGCACCTTCA TCATCAACGG CACCGAACGG GTGGTGGTGT CCCAGCTCGT CCGCTCGCCG
GGCGTGTACT TCGACCAGTC GATCGACAAG TCCACGGACA AGGACGTCTT CAGCGTCAAG
ATCATCCCGA GCCGTGGTGC CTGGCTGGAG TTCGACGTCG ACAAGCGCGA CACCGTCGGT
GTGCGTATCG ACCGCAAGCG TCGTCAGCCG GTCACAGTCC TGCTGAAGGC GCTCGGCTGG
ACCAACGAGC AGATCCGGGA GCGGTTCTCC TTCTCCGAGA CGCTGCTCGC GACCCTGGAG
AAGGACCCCA CCACGACCCA GGACGAGGCG CTGCTCGACA TCCACCGCAA GCTGCGGCCG
GGTGAGCCTC CGACGAAGGA GAGCGCCCAG GCGCTGGTGG AGAACCTGTT CTTCAAGGAG
AAGCGGTACG ACCTCGCCAA GGTCGGTCGG TACAAGGTCA ACAAGAAGCT CGGCCTGAAC
ATCCCGTACG ACGTCGGCAC GCTGACCGAA GAGGACATCG TCGCCACCAT CGAGTACCTG
GTCCGCCTCC ACGCGGGCGA GGAGACGATG AAGGTCGGCG ATGTCGAGGT GCCGGTCGAG
GTCGACGACA TCGACCACTT CGGTAACCGC CGCGTCCGTA CCGTCGGCGA GCTGATCCAG
AACCAGATCC GGGTCGGTCT CTCCCGCATG GAGCGGGTGG TCCGCGAGCG GATGACCACG
CAGGACGTCG AGGCCATCAC GCCGCAGACC CTGATCAACA TCCGCCCGGT CGTCGCTGCG
ATCAGGGAGT TCTTCGGAAC CTCCCAGTTG TCGCAGTTCA TGGACCAGAA CAACCCGCTG
TCGGGTCTGA CGCACAAACG GCGCCTCAAC GCGCTCGGCC CCGGTGGTCT GTCGCGTGAA
CGCGCCGGCA TGGACGTCCG TGACGTGCAC CCCAGCCACT ACGGCCGGAT GTGCCCGATC
GAGACGCCGG AAGGCCCGAA CATCGGTCTG ATCGGTTCGC TGGCCTCGCA CGCGAGGGTC
AACCCGTTCG GGTTCATCGA GACCCCGTAC CGGAAGGTCG TCAACGGTCG GGTCACCGAC
GAGGTGCACT ACCTGACCGC CGACGAGGAG GACCGCTTCG TCAAGGCGCA GGCCAACGCG
CCGCTGACCG AGGACGGCTA CTTCGCCGAG GAGAAGGTCC TCGGACGTCG GAAGGGCGGC
GAGGTCGAGC TGCTCGACCC GATGGAGATC GACTACATGG ACGTCTCGCC GCGGCAGATG
GTGTCCGTGG CGACCGCCAT GATCCCCTTC CTCGAGCACG ACGACGCCAA CCGTGCCCTG
ATGGGTGCGA ACATGCAGCG GCAGGCCGTT CCGCTGCTGC GTAGCGAGGC CCCGCTGGTG
GGTACGGGCG TCGAGCTCCC GGCCGCTGTC GACGCCGGTG ACGTCGTCGT CGCCGAGGAG
TCGGGCGTGG TCGAGGAGCT GTCCGCCGAC ATGATCACGA TCATGCAGGA CGACGGCACC
CGCCGTAGCT ACGGCCTGTA CAAGTTCCGC CGTACCAACG CGGGTACCTG CTTCAACCAC
CGCCCGATCG TCAACGAGGG CGACCGCGTG GAGCGGGGAC AGGTCATCGC CGACGGGCCG
TCGACCGACA AGGGCGAGAT GGCGCTCGGC AAGAACCTCC TCGTGGCGAT CATGCCGTGG
GAGGGCCACA ACTACGAGGA CGCCATCGTC ATCTCGCAGC GTCTCGTGCA GGACGACGTG
CTCACGTCGA TCCACATCGA GGAGTACGAG ATCGACGCCC GGGACACCAA GCTCGGCGCC
GAGGAGATCA CTCGGGACAT CCCGAACGTC TCCGAGGACG TGCTCGCCGA CCTCGACGAG
CGCGGCATCG TCCGGATCGG TGCCGAGGTC CGTGACGGCG ACATCCTGGT CGGGAAGGTC
ACGCCCAAGG GTGAGACCGA ACTGACCCCC GAGGAACGCC TGCTCCGTGC CATCTTCGGC
GAGAAGGCCC GCGAGGTGCG GGACACGTCG CTGAAGGTGC CGCACGGTGA GACGGGCAAG
GTCATCGGCG TCCGCGTGTT CTCCCGCGAG GAGGACGACG AGCTGCCTCC GGGCGTCAAC
GAGCTCGTCC GCGTCTACGT CGCGAAGAAG AGCAAGATCC AGGACGGCGA TAAGCTGGCC
GGTCGGCACG GTAACAAGGG TGTGATCGGC AAGATCCTGC CCGTGGAGGA CATGCCGTTC
CTCCCCGACG GCACGCCCGT CGACGTCGTG CTGAACACCC ATGGTGTGCC CCGACGGATG
AACATCGGGC AGATCATGGA GCTGCACCTC GGTTGGCTGG CCTCCCAGGG CTGGAAGGTC
GAAGGCAACC CCGAGTGGGC GAAGAACCTG ACCGAGGAGC TGCGGGACGT CGAGCCGGGC
ACGAACACCG CGACACCGGT GTTCGACGGT GCCCGGGAGG AGGAGATCAC GGGGCTGCTC
GGCTGCACCA AGCCGAACCG CGACGGCCAG CGCCTGGTCG GTCCGGACGG CAAGGCCACG
CTGTTCGACG GCCGCACCGG CGAGCCGTTC CCGTACCCCG TGGCCGTCGG CTACATGTAC
ATCCTGAAGC TGCACCACAT GGTGGACGAG AAGATCCACG CTCGCTCCAC CGGTCCGTAC
TCGATGATCA CGCAGCAGCC TCTGGGTGGT AAGGCGCAGT TCGGTGGCCA GCGCTTCGGT
GAGATGGAGT GCTGGGCCAT GCAGGCGTAC GGCGCCGCCT ACACCCTCCA GGAGCTGCTC
ACGATCAAGT CCGACGACGT GGTTGGCCGT GTCAAGGTCT ACGAGGCCAT CGTCAAGGGC
GAGAACATGC CGTCGCCGGG CATTCCCGAG TCGTTCAAGG TGCTGCTGAA GGAACTTCAG
TCGCTGTGCC TGAACGTCGA GGTCCTCTCC AGCGACGGCG CCTCCATCGA GATGCGCGAC
TCCGACGACG AGGATCTCGA ACGCGCCGCT GCCAACCTCG GCATCAACCT GTCCCGCAAC
GAGTCGCCCT CCGTGGACGA CGTCGTGCAA TGA
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| Protein sequence | MSPEGRILAV SPANQASAAT NSNRPSTGIP GAPKRVSFGE IREPLGIPNL LDVQIQSFEW
FTGSEAWYER AVNEGEENPV GGLEEVLNEI SPIEDFSGSM SLSFSDPRFD EVKASVEECK
DKDMTYAAPL FVTAEFVNHN TGEIKSQTVF MGDFPVMTDK GTFIINGTER VVVSQLVRSP
GVYFDQSIDK STDKDVFSVK IIPSRGAWLE FDVDKRDTVG VRIDRKRRQP VTVLLKALGW
TNEQIRERFS FSETLLATLE KDPTTTQDEA LLDIHRKLRP GEPPTKESAQ ALVENLFFKE
KRYDLAKVGR YKVNKKLGLN IPYDVGTLTE EDIVATIEYL VRLHAGEETM KVGDVEVPVE
VDDIDHFGNR RVRTVGELIQ NQIRVGLSRM ERVVRERMTT QDVEAITPQT LINIRPVVAA
IREFFGTSQL SQFMDQNNPL SGLTHKRRLN ALGPGGLSRE RAGMDVRDVH PSHYGRMCPI
ETPEGPNIGL IGSLASHARV NPFGFIETPY RKVVNGRVTD EVHYLTADEE DRFVKAQANA
PLTEDGYFAE EKVLGRRKGG EVELLDPMEI DYMDVSPRQM VSVATAMIPF LEHDDANRAL
MGANMQRQAV PLLRSEAPLV GTGVELPAAV DAGDVVVAEE SGVVEELSAD MITIMQDDGT
RRSYGLYKFR RTNAGTCFNH RPIVNEGDRV ERGQVIADGP STDKGEMALG KNLLVAIMPW
EGHNYEDAIV ISQRLVQDDV LTSIHIEEYE IDARDTKLGA EEITRDIPNV SEDVLADLDE
RGIVRIGAEV RDGDILVGKV TPKGETELTP EERLLRAIFG EKAREVRDTS LKVPHGETGK
VIGVRVFSRE EDDELPPGVN ELVRVYVAKK SKIQDGDKLA GRHGNKGVIG KILPVEDMPF
LPDGTPVDVV LNTHGVPRRM NIGQIMELHL GWLASQGWKV EGNPEWAKNL TEELRDVEPG
TNTATPVFDG AREEEITGLL GCTKPNRDGQ RLVGPDGKAT LFDGRTGEPF PYPVAVGYMY
ILKLHHMVDE KIHARSTGPY SMITQQPLGG KAQFGGQRFG EMECWAMQAY GAAYTLQELL
TIKSDDVVGR VKVYEAIVKG ENMPSPGIPE SFKVLLKELQ SLCLNVEVLS SDGASIEMRD
SDDEDLERAA ANLGINLSRN ESPSVDDVVQ
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