Gene Svir_02440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_02440 
Symbol 
ID8385582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp245269 
End bp245952 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content69% 
IMG OID644974345 
ProductABC-type antimicrobial peptide transport system, ATPase component 
Protein accessionYP_003132153 
Protein GI257054321 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.233481 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGACG AGCCGCTGTT GCAGGCCACC GCCCTGTACA AGTCCTTCGG TGCCACGCAG 
GCACTGCGGG GCGCGAGCAT CGAGGTCCAC GCGGGGGAGA TCGTGGCCGT GGTCGGTCCC
TCGGGGTCGG GCAAGTCCAC GTTGCTGCAC TGTCTTGCGG GGATCCTCGA CCCCGATTCG
GGGACGGTGC GTTACCGAGG CAGGGACCTG GACTCCCTGT CGGACAAACA CCGCAGTGCC
CTGCGTCGCA CGGAGTTCGG CTTCGTCTTC CAGTTCGGCC AGTTGGTACC CGAGCTCACC
TGCGTGGAGA ACGTCGCCAT GCCCCTGCGG TTGAGTGGTG TCCGCAGGAG AACGGCCGAG
GCCCGGGCGC TCGAGATGAT GACGCGGCTT CAGGTGGACG ACGTGGCCGA CTCGCGTCCC
GGGGACGTCT CCGGCGGGCA GGGACAGCGG GTCGCCGTGG CCCGTGCACT GGTCACCGGG
CCACGCGTGG TCTTCGCCGA CGAACCGACC GGTGCGCTGG ACTCCCTGAA CGGTGAGCGG
GTCCTGCGGC TGCTCGTCGA GACGTCCCGG GCCAGCGACA CCGCCGTCGT GCTCGTGACC
CACGAAGCAC GTGTGGCGGC GTATTCCCAC CGGGAGGTCG TCGTCCGTGA CGGCTGTACG
GATCCCCTCG GGGTTCCGGC ATGA
 
Protein sequence
MSDEPLLQAT ALYKSFGATQ ALRGASIEVH AGEIVAVVGP SGSGKSTLLH CLAGILDPDS 
GTVRYRGRDL DSLSDKHRSA LRRTEFGFVF QFGQLVPELT CVENVAMPLR LSGVRRRTAE
ARALEMMTRL QVDDVADSRP GDVSGGQGQR VAVARALVTG PRVVFADEPT GALDSLNGER
VLRLLVETSR ASDTAVVLVT HEARVAAYSH REVVVRDGCT DPLGVPA