Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_02440 |
Symbol | |
ID | 8385582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 245269 |
End bp | 245952 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644974345 |
Product | ABC-type antimicrobial peptide transport system, ATPase component |
Protein accession | YP_003132153 |
Protein GI | 257054321 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.233481 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCGACG AGCCGCTGTT GCAGGCCACC GCCCTGTACA AGTCCTTCGG TGCCACGCAG GCACTGCGGG GCGCGAGCAT CGAGGTCCAC GCGGGGGAGA TCGTGGCCGT GGTCGGTCCC TCGGGGTCGG GCAAGTCCAC GTTGCTGCAC TGTCTTGCGG GGATCCTCGA CCCCGATTCG GGGACGGTGC GTTACCGAGG CAGGGACCTG GACTCCCTGT CGGACAAACA CCGCAGTGCC CTGCGTCGCA CGGAGTTCGG CTTCGTCTTC CAGTTCGGCC AGTTGGTACC CGAGCTCACC TGCGTGGAGA ACGTCGCCAT GCCCCTGCGG TTGAGTGGTG TCCGCAGGAG AACGGCCGAG GCCCGGGCGC TCGAGATGAT GACGCGGCTT CAGGTGGACG ACGTGGCCGA CTCGCGTCCC GGGGACGTCT CCGGCGGGCA GGGACAGCGG GTCGCCGTGG CCCGTGCACT GGTCACCGGG CCACGCGTGG TCTTCGCCGA CGAACCGACC GGTGCGCTGG ACTCCCTGAA CGGTGAGCGG GTCCTGCGGC TGCTCGTCGA GACGTCCCGG GCCAGCGACA CCGCCGTCGT GCTCGTGACC CACGAAGCAC GTGTGGCGGC GTATTCCCAC CGGGAGGTCG TCGTCCGTGA CGGCTGTACG GATCCCCTCG GGGTTCCGGC ATGA
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Protein sequence | MSDEPLLQAT ALYKSFGATQ ALRGASIEVH AGEIVAVVGP SGSGKSTLLH CLAGILDPDS GTVRYRGRDL DSLSDKHRSA LRRTEFGFVF QFGQLVPELT CVENVAMPLR LSGVRRRTAE ARALEMMTRL QVDDVADSRP GDVSGGQGQR VAVARALVTG PRVVFADEPT GALDSLNGER VLRLLVETSR ASDTAVVLVT HEARVAAYSH REVVVRDGCT DPLGVPA
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