| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_01680 |
|---|
| Symbol | |
|---|
| ID | 8385506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 178043 |
|---|
| End bp | 178804 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644974272 |
|---|
| Product | predicted nucleoside-diphosphate sugar epimerase |
|---|
| Protein accession | YP_003132082 |
|---|
| Protein GI | 257054250 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.576893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.223324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG CTGTCCTGGG CGCTACCGGA ACGGCCGGTT CCCGCGTCGT GCGGCGTCTG
AAGGATGAGA ACGTCGACGT CGTCGCGGTG TCCCGAGCCA GTGGTGTCGA TCTGGTCACC
GGTGACGGTC TGGTCGATGC GCTGGCCGGG GTGGATGCCG TTGTGGACGC GTCGAACGCC
TTACCGCCAA ACGGCTCGAT GGAATGGGGG GAGGCACTCA CCACCGCCAC GCGCAACGTG
GTGGACGCCT GTGGGCGGCG GAAGGTGTCG CGCCTGGTCT TTCTGTCGAT TCTCGGGGCC
GAGGACCCCG TGTTCGACGA GTTTCCCTAT TGCGTGGCGA AACGGGAACA GGAATCGATC
ATCGGTGAAA GCGGCCTGAA CGCCACGATC GTCAAGACCA CACAGTGGTA CGAGTTCGCG
ACCAATCCCG CTGCGGTGGT CTTCCACGAC GACAGGGTCG AGGTGCAGGA CTGGTTGGTG
CAGCCGGTCG CGGCCGACAC GGTTGCCGAT GTCCTCGTCC GAGAAGCCTT GGATACGTCC
GGTGGGGGCC AGGTACTGAT CGCCGGTCCG GAGAGGATTC GTCTGCCGGA ATTGGCCCGG
CGTCGATTGA AGACGCTCGG GGACGAGCGG CCGGTGCATG CCATTGAGCC GGACCTACCC
GTGCTCGCCG AGGGTGCGTT GCTGGCGTGG GAGCGGGCTA AGGTCATGGG GCCGGGACTG
GAGGAGTGGC TCGCCTCGCT GCGGCGGGAA ACCACACGAT GA
|
|---|
| Protein sequence | MKIAVLGATG TAGSRVVRRL KDENVDVVAV SRASGVDLVT GDGLVDALAG VDAVVDASNA
LPPNGSMEWG EALTTATRNV VDACGRRKVS RLVFLSILGA EDPVFDEFPY CVAKREQESI
IGESGLNATI VKTTQWYEFA TNPAAVVFHD DRVEVQDWLV QPVAADTVAD VLVREALDTS
GGGQVLIAGP ERIRLPELAR RRLKTLGDER PVHAIEPDLP VLAEGALLAW ERAKVMGPGL
EEWLASLRRE TTR
|
|---|
| |