| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_01080 |
|---|
| Symbol | |
|---|
| ID | 8385446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 108808 |
|---|
| End bp | 112146 |
|---|
| Gene Length | 3339 bp |
|---|
| Protein Length | 1112 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644974212 |
|---|
| Product | ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD |
|---|
| Protein accession | YP_003132023 |
|---|
| Protein GI | 257054191 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit
[TIGR02868] thiol reductant ABC exporter, CydC subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.218247 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTGC CCACCCACAC ACCTCTTTCC GCCAACAAGG TGTCTTCCGA CCGCCAATCC
GAACCGGACA CCTCGTCGTG GGTGGGCCGG GGCCCGCTCG GCGCGTTGCC GTCGCTCTCC
TCGGCGGCGC GCCGGGCGCT GGCCCTGACC GCGGTCCTGT CCGTGGCCAA CGCCGGGGCG
TTGGTGGCGC AGGCGTTCCT GCTGGCCCAC GTGCTCGCCG ACATCGTCGC CGGTGAGACC
ACCGGACACG CGCCGGTGGT GGCGGCGCTT GTGGGCGCGG TGTTGGCGCG GGGAGTGCTC
GGCTGGGCAA TGCGGGCCGT CGCCGCCCGG GCCGCGGCCG GAGCGAAGGA GGAGCTGCGC
GCCAAGACGG TCGACCACGC GTTGCGGCTC GGCCCGGAGT GGATCGACGA ACGGGGCGCG
GGGGAGCTCA CGGCGCTCAC CACGAGGGGA CTCGACGCGC TCGACGCCTA TTTCACCGAG
TACCTGCCGG CCTTGGTGAC CGCGGCCGTG GTGCCTGTGG CCGCGGGGGC CGCGGTGTTG
TTCGTCGACT GGCCCTCCGC CGTACTCATC GCGATCACGC TGCCGCTGCT GCCGTTGTTC
GCCATCCTCA TCGGCAAGAA CACCGCCGAC CGCGTCGCCC GGGCCACCGA CGCCGTGCAC
CGACTGTCGG GCCACCTGTT GGAGCTGTTG CGGGCGCTGC CGGTGCTCAC GGCGTTTCGG
CGCGCCGAGG CGCAGGCCGA AGCGGTCCGC AGGGTGAGTG ATCGACACCG TACGACGACC
CTGTCGACGT TGCGGCTGGC GTTCGCGTCG GCGTTCGCGC TCGAACTCGC GGCCACCTTG
TCGGTGGCAC TGGTCGCCGT GGTGATCGGG GTGCGCCTGG TGTCCGGTGA CCTGTCGTTG
GCCGTGGGGT TGGGCGTGCT GATCCTGGCA CCGGAGTGTT ACCAGCCCCT ACGCACGGTC
GGCAGCGCGT TCCACGCCAG CGAGGACGGG GTGGAGGCCG TCCGCAGGGT CACCGACATC
CTGGCGGTGC CTCCGCCGCG TGAAGGCACG CGAGTGCCGA CCCGCGGTGA GGTGCGCGTG
CGGGATCTGC GGGTACGGCG TCGGAACGGC TTCGCGCCCG ACGGGGAGAC GTTCACCGTC
GCACCGGGAC GGCGGGTGTG GTTGTCCGGG CGCAGCGGGA CCGGGAAGAC GACCACGCTG
TCGGTGCTGC TGGGGTTCGT CACACCGCAT TCGGGGTCGG TGACGGTGGC CGGTGTGCCG
CTGGACGAGA TCGACATGTC GCGGTGGCGG GAGGCCGTCG CGTGGGTTCC CCAATCACCC
GCGTTCACCG GCGGCACCGT CCGTGCCGAA CTCGGTCTCA CCGGCGCGTC GGCCGCGGAG
GTCGACGCCG TGTTGCGGCG ACTGGACCTC GACGGACTCG CCGAACGTCC CGTGCACCGG
TTGTCCGTGG GACAACGGCA GCGGGTCGCC GTGGCCAGGG CCCTGCTGCG CGTACGACAG
GGGGCGTGGC TGCTCCTGCT CGACGAGCCG ACCGCGCACC TCGACGCGGC CAACGCCGAG
CGTGTGTGGC AAGCGGTGCA GGAGGCGCAG GACGCGGGCG CCGCGGTGGT CGTCGCGGCC
CATCCTCGCC GTGAGGCGAC ACCGTCGGAG GGGAACGCGC GGTCCGAGGC CGCTTCCGAG
GTCGGGTCGG GCCGAACGGA CCGTCATGTA CGTCCGGTGC CGCTGCGGGA GTTGGGGGAG
CGTCGTCTCA TCCGAGGCGT CGTGCTCGGT GCGGCGGCCT TGCTGGCCGG GGTGGCGCTC
ACCGCCACCT CGGCGTGGCT CATCGCCAAG GCGTCGCAGC AACCCCCGAT CCTCACGTTG
ACCGTGGCGG TGGTGGGGGT GCGCACGTTC GGACTCGCCC GCGCGGGGTT GCGTTACGTC
GAACGGCTCG TCACCCACGA CGGTGCGTTC CGGGTCGCGG CGCGGCTGCG GGAACGCCTG
TGGCGGGCGA TGGTGCGGCT GGGGCCGGCC CGCGTGCTCG GGGCGTCCCG GGACGAGGGG
TTGCGCAGGC TGGTCGACGA CGTGGACACC GTGCGGGACC TGCTGCCGCG GGCTGTGACA
CCGCCGTTCG TGGCGGCCGC GGTCGTGTTC GGTGGGTGCG TGGTGCAGAC GGTCGTGCTC
CCCCGCGCGG GGTGGGTGCT CGTCGGTGCG AGCGTGGTGG CGGCGCTCGT GGCGCCCACG
CTGGCGGTAC TGCTCGACCG GCACGCGACG GCCACCCTGG CCGAGGGCCG ACGGGACGTC
GCCGCACGCG TGTTGTCCCT GTTCGACGGT GCCGCGGAGT TGCTCGCGTT CGGTGCCCAC
GCCCGGCATC GGGCGCGGTT GGCCGACAGC GACGCCCGGC TGGCCGCCGT CGCGCGCAGG
CAGGCCTGGG GTGAGGGCGC GGCCGAGGCC GTGGTGATCG TGGCGACGGG GTTGGCCGCG
GTCACGGGCG TGGTGTTCGC GGCCGACGCC GTGGGCGCGG GCACGCTCGA TCCCGTGCTC
GCCCCGGTGC CGGCGCTCGT GCCGCTCGCG TTGGCCGAGG CGTTGTCGCT GCTGCCGCCC
GCGGCGCAGC ATTGGGACGC CCTGCGGCGG GCGCGGACCA GGTTGGCGGC CACACTCGAC
GTCGAGTCCG TCCCGGACCG CCCCGAAGGC GCCGTCGAAC TGACCCCCGG GGGTGGTGTG
CGCCTTCGTG CGGTGGACGT GCGTTGGCCG GGAGGTGCTC GTCCGACGTT GCGGGACGTC
GACCTGGACA TCCCCGAAGG GGCGTACGTC GCCGTCGTCG GACCGTCGGG GTCGGGCAAG
TCGTCGCTGT TGGCGACGTT GTTGGGGTTC CTGCGTCCCG AGCGGGGCTG CGCCGTGGTG
CCCGAGCGGG TGGCGTGGGC GCCGCAGGAA CCGCAACTGG TGTCCACGAC CGTCGCCGAG
AACCTGCGGC TGGCCGACCC CCACGCCGAC CTCGCGCGAC TGGAGTGGGC GCTGCGCACC
GCGGGGATCG CCGAACTCGA CGTCGACACC GTGCTGGGCG ACGCCGGCAG CGGGTTGTCC
GGGGGCCAGG CCCACCGGGT GGCGTTGGCG AGGGCGGTGC TCGCCGCGCA GGACGCCGAC
CTGGTGTTGC TCGACGAGCC CACGGCGCAC CTGGACGAGT CGACCGCCCG CACGGTCCTG
GCCAACCTGC GGGAGGCGTT GGCGGGTCGG ACGGTGGTCC ACGTGACCCA CCGGCCGGAG
GAGGCGGCCG ATGCGGACCT GATCGTGCAG GTACGGGACG GACGGGTGCG GGTGTTGGGT
GACATGCGTG AGCCGACGAG AGCAGGTGAG CGGGCATAG
|
|---|
| Protein sequence | MNVPTHTPLS ANKVSSDRQS EPDTSSWVGR GPLGALPSLS SAARRALALT AVLSVANAGA
LVAQAFLLAH VLADIVAGET TGHAPVVAAL VGAVLARGVL GWAMRAVAAR AAAGAKEELR
AKTVDHALRL GPEWIDERGA GELTALTTRG LDALDAYFTE YLPALVTAAV VPVAAGAAVL
FVDWPSAVLI AITLPLLPLF AILIGKNTAD RVARATDAVH RLSGHLLELL RALPVLTAFR
RAEAQAEAVR RVSDRHRTTT LSTLRLAFAS AFALELAATL SVALVAVVIG VRLVSGDLSL
AVGLGVLILA PECYQPLRTV GSAFHASEDG VEAVRRVTDI LAVPPPREGT RVPTRGEVRV
RDLRVRRRNG FAPDGETFTV APGRRVWLSG RSGTGKTTTL SVLLGFVTPH SGSVTVAGVP
LDEIDMSRWR EAVAWVPQSP AFTGGTVRAE LGLTGASAAE VDAVLRRLDL DGLAERPVHR
LSVGQRQRVA VARALLRVRQ GAWLLLLDEP TAHLDAANAE RVWQAVQEAQ DAGAAVVVAA
HPRREATPSE GNARSEAASE VGSGRTDRHV RPVPLRELGE RRLIRGVVLG AAALLAGVAL
TATSAWLIAK ASQQPPILTL TVAVVGVRTF GLARAGLRYV ERLVTHDGAF RVAARLRERL
WRAMVRLGPA RVLGASRDEG LRRLVDDVDT VRDLLPRAVT PPFVAAAVVF GGCVVQTVVL
PRAGWVLVGA SVVAALVAPT LAVLLDRHAT ATLAEGRRDV AARVLSLFDG AAELLAFGAH
ARHRARLADS DARLAAVARR QAWGEGAAEA VVIVATGLAA VTGVVFAADA VGAGTLDPVL
APVPALVPLA LAEALSLLPP AAQHWDALRR ARTRLAATLD VESVPDRPEG AVELTPGGGV
RLRAVDVRWP GGARPTLRDV DLDIPEGAYV AVVGPSGSGK SSLLATLLGF LRPERGCAVV
PERVAWAPQE PQLVSTTVAE NLRLADPHAD LARLEWALRT AGIAELDVDT VLGDAGSGLS
GGQAHRVALA RAVLAAQDAD LVLLDEPTAH LDESTARTVL ANLREALAGR TVVHVTHRPE
EAADADLIVQ VRDGRVRVLG DMREPTRAGE RA
|
|---|
| |