Gene Svir_01040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_01040 
Symbol 
ID8385442 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand+ 
Start bp104647 
End bp105279 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content74% 
IMG OID644974208 
Producttranscriptional regulator 
Protein accessionYP_003132019 
Protein GI257054187 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.0791701 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCAGGG AGAGCTCGCT GACGCTGGAT CGCGGGCTCG CACTGCTGCA GGCCGTGGCC 
GACGCGGGGG AGGCGTCGGC CACGGTGACG GACCTGGCCG CGGCGATCGG CACCAGTAGG 
GCCGCCGTGT ACCGCCTGTT GGTGCCCCTG GCCGAACGCG GGCTGGTGTG GCGGGACGGC 
AGTCGCGTCC GACTCGGCTC GGGAGTGCTC CGGCTGGCCG AGCAGATGCT GCCGCAACTG 
CGGGCCGCGG CCCGGCCGGT GCTGCGCGAC CTGGCCGACA CCGTGGGCGC GACGGCGCAC 
CTGTCGGTGG TCGAGGGCGA CCAGGTCCAT GTCGTCGCGG TGGCGGAACC GCTGCGGACG 
ACGTTCCACG TGGCGTACCG GTTGGGCAGT AGGCACCCGG TGTCGCGGGG TGCCGTCGGC 
AAGGCCCTCG CGCTACGGCC GCGGGGCAAG GGGTGGGCCG CCGTCACGGG TGATCCGCAA 
CCCGGCATCT ACGGTGTCGC GGCACCCGTG CGAGGTGTGG TCGGGGTCAG GGCGGCGCTG 
GGCGTGGTGT CGTTCACGGC CCTGGACAAC TCGGTGGTCG GTCCTCGGCT CGTGGAGGCG 
GCGAACACCC TCGTCGAGAC GTTGCGCGCT TGA
 
Protein sequence
MTRESSLTLD RGLALLQAVA DAGEASATVT DLAAAIGTSR AAVYRLLVPL AERGLVWRDG 
SRVRLGSGVL RLAEQMLPQL RAAARPVLRD LADTVGATAH LSVVEGDQVH VVAVAEPLRT 
TFHVAYRLGS RHPVSRGAVG KALALRPRGK GWAAVTGDPQ PGIYGVAAPV RGVVGVRAAL 
GVVSFTALDN SVVGPRLVEA ANTLVETLRA