| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_00590 |
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| Symbol | |
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| ID | 8385397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 58128 |
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| End bp | 59906 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644974163 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_003131975 |
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| Protein GI | 257054143 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0767816 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGGTC ATTCGGATGA AGAGGGTGAA CGTTCGAGGA CCGAGCTGGA GGACTCGGAT
TCGGAAAGGA TCGTAGACCA ACCGGGGGAC ACCGATTCTC GATCCACTGC GGAAGCGAAA
CACGATCCGG AGTTGACGCC TGCGCACGAG AAGCACCGTC CCCGGACCGA CCACGTGGTG
TTCGGGGTGT CGGCGATCAT CGCGTTGGCG ATCGTGGCGT GGGGTATCGC CTCGCCCGGC
AGCCTCGCCG TCGTCGCGGA CACACTCCTC AACGACGTCG TCATCCCGTA CGGGGGTTGG
GCCTTCGTCC TCACCGCGAG CGGCTTCGTG CTCTTCGCCA TCGGGGTGGC GATCAGCAGG
TACGGCCGTA TCCCCCTGGG ACGGGACGAC GAGCAGCCGG AGTTCCGGAC GGTCTCGTGG
ATCGCGATGA TGTTCAGCGC GGGCATGGGT ATCGGACTCA TGTTCTTCGG TGTCTACGAG
CCCGTGGCGC ACTTCGTCGA ACCACCCCCC GGCACGGTGC CGGGCAACTC CGATCAGGCC
GTGCACACGG CGATGGCGAC CACGCTCTTC CACTGGACGG TGCATCCGTG GTCGATCTAC
GCCGTCGTCG GCCTGGCCAT CGCCTACAGC GCGTTCCGCA AGGGGCGAAG CCAGCTCATC
TCGGCCGTGT TCGCACCTCT GATCGGCACA CGGCGCAGCG AGGGGCCGTT GGGCAAGGCC
ATCGACATCA TGGCGATCTT CGCGACGCTG TTCGGCTCGG CCGCCTCGCT CGGGCTCGGT
GCTCTGCAGG TCGGCGGTGG GCTGGCCGCG GTGGGTTGGG CCGAAAAGCC CGGAACCGGC
CTGCTGGTCG GGATCATCGC GGTGCTCACG GTCGCGTTCG TGGCCTCCGC CGTGTCCGGT
ATCGCGCGGG GGATTCAGTG GCTGTCGAAC ATCAACATGG TGCTCGCCGC CCTGCTCGCC
GTGTTCCTCC TGGTGGTGGG GCCGACGGTG CTGATCCTCA ACATGGTGCC CGGTGCCCTC
GGCGATTACC TGCACGATCT GTCCGCCATG GCGGGACGGA CCGGTGCGAC CGGTGGCGAG
GAGATGCGGG AGTGGCTGGG CAGCTGGACC GTCTTCTACT GGGCGTGGTG GATTTCGTGG
GCGCCCTTCG TCGGCATGTT CATCGCGCGG ATCTCCCGGG GTCGCACGAT CCGGGAGTTC
GTCATCGGTG TGATCGCCGT GCCGAGCATC GTCGGCCTGG TCTGGTTCTC GATCTTCGGT
GGCGCCGCCA TCCAGTACCA GCGTTCAGGT GTGGACATCG CGGGCGCCGG TGGCGAGGAG
GCGGCCACGT TCACGCTGCT GGAGAGCCTG CCGCTGTTCC TGCCGATCGC CATCATCGTG
ATGGTCCTGG TGTCGATCTT CTTCGTGTCC GGGGCCGACG CGGCCTCCGT GGTGATGGGC
ACGCTCTCAC AGCGGGGCTC GTCGGGGCCG CATCGTCGGG TCGTCATCTT CTGGGGAGCG
GTGATGGGGG CGGTCGCGGC CGTGATGCTC CTGGTCGGCG GGGACGACGC CCTCAACGGG
CTGCAGAACC TCACCATCCT CGTGTCGGTG CCGTTCGTGT TCGTCATGAT CGCGTTGTGT
GTCTCGCTGT ACCGGGATCT ACGTCGTGAT CCGCTGGTGG TCAGCGAGGA CGAGGTCATG
CGCTCGCTGC GGAAGCTCCA CGCCGAACGC AAGGCCGAAC GCAAGGCTGA ACGCAGGGCC
GAACTGGCCA GGGTCCGTAG ACATCTGCGC AAGCGGTAG
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| Protein sequence | MAGHSDEEGE RSRTELEDSD SERIVDQPGD TDSRSTAEAK HDPELTPAHE KHRPRTDHVV
FGVSAIIALA IVAWGIASPG SLAVVADTLL NDVVIPYGGW AFVLTASGFV LFAIGVAISR
YGRIPLGRDD EQPEFRTVSW IAMMFSAGMG IGLMFFGVYE PVAHFVEPPP GTVPGNSDQA
VHTAMATTLF HWTVHPWSIY AVVGLAIAYS AFRKGRSQLI SAVFAPLIGT RRSEGPLGKA
IDIMAIFATL FGSAASLGLG ALQVGGGLAA VGWAEKPGTG LLVGIIAVLT VAFVASAVSG
IARGIQWLSN INMVLAALLA VFLLVVGPTV LILNMVPGAL GDYLHDLSAM AGRTGATGGE
EMREWLGSWT VFYWAWWISW APFVGMFIAR ISRGRTIREF VIGVIAVPSI VGLVWFSIFG
GAAIQYQRSG VDIAGAGGEE AATFTLLESL PLFLPIAIIV MVLVSIFFVS GADAASVVMG
TLSQRGSSGP HRRVVIFWGA VMGAVAAVML LVGGDDALNG LQNLTILVSV PFVFVMIALC
VSLYRDLRRD PLVVSEDEVM RSLRKLHAER KAERKAERRA ELARVRRHLR KR
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