| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_00260 |
|---|
| Symbol | |
|---|
| ID | 8385364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 23096 |
|---|
| End bp | 23644 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644974130 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| Protein accession | YP_003131943 |
|---|
| Protein GI | 257054111 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.06558 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGACA GCAATGCAAC CCCCAGTGGC GGGAAGATCA CAGCCACCTT GCACACCAAT
CGGGGTGACA TCCGGTTGGT GCTCTTCCCG GATCACGCGC CGAAGACGGT CGCGAACTTC
GTCGGACTGG CTGAAGGCAC GAAGGAGTAC ACCCAGCCGA ACGCCAAAGG TGAGAGGTCC
GGCCCGTTCT ACGACGGTTC GATCTTCCAC CGCGTCATCG ACGGCTTCAT GATCCAGGGC
GGTGACCCCA CGGGCACCGG CCGCGGTGGT CCCGGGTACA AGTTCGGTGA CGAGTTCCAC
CCCGAGCTGC AGTTCGACCG GCCGTACCTG CTGGCCATGG CCAATGCGGG GCCCGGCACG
AACGGATCGC AGTTTTTCAT CACCGTCGCC CGGACGCCGC ACCTGAACTT CAAGCACACC
ATCTTCGGTG AGGTGGCCGA CCAGGAGTCC CGGGAGGTCG TCGACGCGAT CGCTCGCACG
GCCACCGGCC CCGGTGACAA GCCGCTCGAG GACGTCGTCA TCGAGCGGGT CACCATCGAG
CGCGCCTGA
|
|---|
| Protein sequence | MTDSNATPSG GKITATLHTN RGDIRLVLFP DHAPKTVANF VGLAEGTKEY TQPNAKGERS
GPFYDGSIFH RVIDGFMIQG GDPTGTGRGG PGYKFGDEFH PELQFDRPYL LAMANAGPGT
NGSQFFITVA RTPHLNFKHT IFGEVADQES REVVDAIART ATGPGDKPLE DVVIERVTIE
RA
|
|---|
| |