| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_2689 |
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| Symbol | secD |
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| ID | 8384994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhabdus utahensis DSM 12940 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013158 |
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| Strand | + |
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| Start bp | 2754409 |
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| End bp | 2755941 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644973763 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_003131583 |
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| Protein GI | 257053750 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATTC GAGAGAACTG GCGGATCGTC CTGCTGGTCG TGTTCGTCCT GGGTAGTGGT
ATTGCCCTGT TCGCGCCCGT CACCGGTGGC GCAGACGATG GCGGTATCAC CAACCTCCAG
TACGGGATTC AACTCGACGG CGGGACCAGC ATTCAGGCCC CTGCGGTGGG GATCACGGCC
GAGGACGTCA ACGTCAGATT CCAGCAAGAG ACCGCACTCG AACAGAACCT CTCGGAGTCG
CTATCGCTTG ACCTAGCCGA CATCAGGGTT TCGAATGAGT CATCGACTGT CGAGGTATTC
GTGCGAAACG TCACTCACGA TCAGCTTCGG AACGCACTGA ATGCGGAAGG ATATCAACCG
GGAACTGTCC GTGACGGGGT GACCGGCCAG ACTCGCGAAG ATATGGTCGA TGTCATTCGA
GACAAGATCA CCGAATCCGC ACTCAGTGGC GGGAGCGTCT CGAGACTCAA CGCGATCGAG
GGGAACCTCA TCTCGATCAC TGCGCCGGAT CGCGATCGGG AGGAACTTCG GTCACTCCTC
AACGAGCGTG GGATCGTCCG TGTCTACGCG GTTCATCCGG ACGAGAACGG ATCGTTCGTT
CCGTCACAGG TACTGGGCCA GGACGAGTTC GGACGGATCG GGACAGCACA GGAACGGGAA
GTGGCCGATG GAACAGAAGC TTTCGTCCCG GTGACGATCA ACGATGACGT CGCCGAACGG
TTCCAGCAGG ATATGGTAGA GTACGGCTTC AACCAGGATC GCAACTGTGG CTACGATCGG
TCGCAGATCA CGAACGTTTC CGCGGTCGAC GACTATTGCC TGGTTACGAC ACTCAACGGA
GAAATCGTCT TCTCTGGCGG TGTGGATGGG GATCTCGGCA GGTCGTTCGC TTCGGGTGGG
TTCGCCACCG ATCCGTCGTT CAGAATGACC ACCGGAGAGA ACATGACCCA GGCGAAAGAC
CTCGAAATCA GCCTTCGAGC CGGCCGTCTC CCCGCACCCC TCGACTTCGA GAACGCGAAC
TATCAGGAAC TCGAACCGGC GCTCGGCCAG CAGTTCCGGA CTGACTCCCT GATCACGGGG
ATCATGGCCG TCCTGGCCGT CAGTGGCATG ATCTTCTTCC GGTATCAGGA CGTCCGGGTT
GCGCTACCGA TGATCGTCAC CGCGATGTCC GAAGTGTTCG TCCTCCTTGG CTTCGTCGCG
CTCGTCCAGT ACCCGTTGAA TCTCTCTCAC ATCGCCGGGT TCATCGCGGT CATCGGGACC
GGGGCCGACG ACCTCATCAT CATCGCCGAC GAGATCCTTC AGCGTGAGGA GATCGCTACC
GATCGGGTGT TCCAGAACCG ATTCCGGAAG GCGTTCTGGG TCATCGGGGC AGCCGCGGCG
ACCACGATCA TCGCGATGAG CCCGCTGACC GTGCTCGGCC TCGGTGATCT GAGTGGGTTC
GCCATCATCA CCATCGTCGG TGTGCTGATC GGGGTCCTGG TCACCCGGCC AGCGTACGGG
AACTTCCTCC GTCGGCTCGT TCTCGACACC TGA
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| Protein sequence | MNIRENWRIV LLVVFVLGSG IALFAPVTGG ADDGGITNLQ YGIQLDGGTS IQAPAVGITA
EDVNVRFQQE TALEQNLSES LSLDLADIRV SNESSTVEVF VRNVTHDQLR NALNAEGYQP
GTVRDGVTGQ TREDMVDVIR DKITESALSG GSVSRLNAIE GNLISITAPD RDREELRSLL
NERGIVRVYA VHPDENGSFV PSQVLGQDEF GRIGTAQERE VADGTEAFVP VTINDDVAER
FQQDMVEYGF NQDRNCGYDR SQITNVSAVD DYCLVTTLNG EIVFSGGVDG DLGRSFASGG
FATDPSFRMT TGENMTQAKD LEISLRAGRL PAPLDFENAN YQELEPALGQ QFRTDSLITG
IMAVLAVSGM IFFRYQDVRV ALPMIVTAMS EVFVLLGFVA LVQYPLNLSH IAGFIAVIGT
GADDLIIIAD EILQREEIAT DRVFQNRFRK AFWVIGAAAA TTIIAMSPLT VLGLGDLSGF
AIITIVGVLI GVLVTRPAYG NFLRRLVLDT
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