Gene Cpin_7272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_7272 
SymbolprfH 
ID8363466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp9090709 
End bp9091341 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content48% 
IMG OID644969405 
Productpeptide chain release factor-like protein 
Protein accessionYP_003126872 
Protein GI256426219 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1186] Protein chain release factor B 
TIGRFAM ID[TIGR03072] putative peptide chain release factor H 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000014386 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.97905 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAGT CAATTATACA GGTAACGGCC GGAAGAGGGC CGGAGGAATG TAGCAGAGTC 
GTGGCAAGGG TGGTAGAAAT GATGATGAAG GATGCCCGTG GAAAAGCATT GGATATCACT
TTACTGGAGA GCACAAAAGG ACATCTGAAA GGAACTTTAT TGTCGGCGGT ATTACTGATT
CAGACAGGCG GTATTTCAAG CAACAAGACC CTTGAAGCGT TTATACAGGA ATGGCGGGGT
ACGATACAGT GGGTAGCGCA GAGTCCTTTC AGAAAATACC ATAAACGAAA GAACTGGTTT
GTGGGTGTGG AGGTCTTTGA TGTGAATAAA CAGCAGGAAT GGAATCTGAA GGACGTGAAA
CTGGAATCAT GCCGGGCGTC CGGACCTGGC GGTCAACATG TTAATAAGGT GGAGACGGCA
GTACGCGGTA CGCATCTGCC ATCGGGTATG CAGGTACTGG CGATGGACAG CCGTTCACAG
TTAGAGAACA AGCAGCTTTG TCTGAAAAGA CTGGAAGCGA AGTTCATGGC CTGGCAGATG
GAACAACTGC TGGCAAAACA GCAGGATCAG TGGCAGGAGC ATAATGAGCT GGAAAGAGGA
CGGGCGGTGA AAGTCATTAC AGATAAATTA TGA
 
Protein sequence
MNKSIIQVTA GRGPEECSRV VARVVEMMMK DARGKALDIT LLESTKGHLK GTLLSAVLLI 
QTGGISSNKT LEAFIQEWRG TIQWVAQSPF RKYHKRKNWF VGVEVFDVNK QQEWNLKDVK
LESCRASGPG GQHVNKVETA VRGTHLPSGM QVLAMDSRSQ LENKQLCLKR LEAKFMAWQM
EQLLAKQQDQ WQEHNELERG RAVKVITDKL