Gene Cpin_7051 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_7051 
Symbol 
ID8363243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8823027 
End bp8825279 
Gene Length2253 bp 
Protein Length750 aa 
Translation table11 
GC content49% 
IMG OID644969184 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_003126653 
Protein GI256426000 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.195009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACAG TGGTAGTAAA ACAATATAAT CTGGACGAGG AACAGGAAAA GAAAGAGATC 
GTTCGTCATT ACCGCGCTTT ACTGAAGTCG CTCAAACCCC GTTTAAAGAA AGGAGACCGC
GAACTGGTGC GTACTGCCTT TGAAATGGCG GCCGATGCAC ACAAGGAAAT GCGCCGGAAA
TCCGGTGAGC CATACATCTT ACATCCCCTC GCTGTAGCGC AGATCTGCGT TGAAGAGATT
GGTTTGGGTG TACGTTCCGC TATTTGTGCC CTGCTGCATG ATACTGTGGA AGACACTGAA
GTCACTCTGG AGGACGTAGA AAGAGCGTTC GGGCCTGAAA TAGCCCATAT CGTAGACGGT
CTGACCAAAA TATCGACCGT TATCGACTCT AACACGAGTA CCGCCCAGGC GGAAAACTTC
AAAAAAATAC TGCTCACACT GGCGGATGAC CCCAGGGTGA TACTGATAAA ACTGGCAGAC
AGGATGCATA ATATGCGTAC CCTGGATAGT ATGAGCCGTG AAAAGCAGCT CAAAATAGCC
TCGGAGACCG TATTTATCTA TGCCCCCCTG GCGCACCGTC TTGGTTTGTA CAACATCAAA
TCGGAGATGG AAGACCTTTC CATGAAGTAC ACCGAGCAGC AGACCTACCG GGAAATCGCT
AAAAAGCTGA AGGAAACCAA GCGTGAGCGT ACCCGTTACA TCAACGAGTT TATCAAACCT
ATCAAGGAGG TATTGCAGGA GGAAGGGCTG AACTTCGAGA TCTTTGGCCG TCCGAAATCC
ATACACTCCA TCTGGAATAA GATCAAAAAG AAGGGCGTCA CCTTTGAAGA GGTATATGAC
CTTTTTGCGA TCCGTATTAT CATGGACTCC CCTTTGGAGA AGGAGAAGTC AGACTGCTGG
AAGGTATATT CCATCATTAC GGATTTTTAT CATCCCAGCC CTGAGCGTAC GCGCGACTGG
CTTAGTAATC CTAAATCCAA CGGGTATGAA GCCCTGCACG TGACCGTAAT GGGGCCACAG
GGTAAATGGG TGGAAGTACA GATCCGTACC AAGCGTATGA ACGATTACGC AGAGAAAGGT
CTGGCTGCCC ACTGGCGTTA TAAGGAGGGC AGTGCCCAGA GCGCCAGCAC GGAGTCTAAA
TTTGATCAGT GGTTCACCCA GATCAGGGAG ATCCTGAACA ACCCGGATTC CAATACGCTG
GACTTCCTGG CTGACTTTAA GAGCAACCTC TTTACAGAAG AGATCTATGT ATATACACCG
AAAGGTGACC TGAAGATATT GCCGGTTAAT TCTACCGCCC TGGATTTTGC TTATTCGATC
CATAGTGCGG TGGGTAATAA GTGTATCGGG GCCAAGGTGA ACTACAAACT GGTGCCTATC
AGCCATAAGC TGCGCAGCGG AGACCAGGTA GAGATCATTA CTTCCAATAA ACAGAAGCCT
ACAGAGGACT GGCTGAACTA CGCACTGACT GCCAAGGCAA AATCCAAGAT CAAGGATGCG
TTGAAGGAAG AAAAGCGGAA AGTGGCCATG GATGGTAAGG ATGTGCTGGA GCGTAAGCTG
GACCACATGA AGATTGCCAA CAGCCAGCAT AATATCAATG AGCTGGTACA GTACTATAAA
CAACCTTCGC CGCTGGACCT GTATTACCAG ATCGCTGTCA AGAACATCGA CCTGAAAGAG
CTGAAGCAGT TCAATGTACT GGGAGATAAA CTGGAAGCGC CTAAACCAGT CGCCTTAAAA
CAACCGGAAC ATATTTCTGA AGATCACCTG AAACATATGA TCCCCGCCAA GAAAGACGCG
GAACTGATCA TTTTCGGGGA AAGTTCAGAT AAGATCGCTT ATAAGCTGGC TAACTGTTGC
CGTCCGATCC CGGGCGATGA CGTTTTTGGT TTCATTACCG CCAGTGAAGG GCTGAAAATA
CACCGTACCA ACTGTCCGAA CGCCGCTCAG CTGCTGGCTA ACTATGGCCA CAGGGTCGTA
AAAACCAAGT GGGTGAAGAA CCGGGAGATC TCCTTCCTGA CCGGGCTCCG GATTGTGGGA
ATGGACGATG TGGGAGTTAT CCACAAGATC ACCAACGTTA TTTCCGGTGA ACTCCGGGTA
AATATTGCAG GTCTGACCAT CGAATCCCGT GAAGGACTCT TTGAAGGCCT TATCAAGGTG
TTCGTACACG ATAAGGAGGA ACTGGATGAA CTGTTCGAAA AACTGAAGAA ACTGGATGGT
ATTCAGTCCG TAAGCCGCCT GGAGGACGAG TGA
 
Protein sequence
METVVVKQYN LDEEQEKKEI VRHYRALLKS LKPRLKKGDR ELVRTAFEMA ADAHKEMRRK 
SGEPYILHPL AVAQICVEEI GLGVRSAICA LLHDTVEDTE VTLEDVERAF GPEIAHIVDG
LTKISTVIDS NTSTAQAENF KKILLTLADD PRVILIKLAD RMHNMRTLDS MSREKQLKIA
SETVFIYAPL AHRLGLYNIK SEMEDLSMKY TEQQTYREIA KKLKETKRER TRYINEFIKP
IKEVLQEEGL NFEIFGRPKS IHSIWNKIKK KGVTFEEVYD LFAIRIIMDS PLEKEKSDCW
KVYSIITDFY HPSPERTRDW LSNPKSNGYE ALHVTVMGPQ GKWVEVQIRT KRMNDYAEKG
LAAHWRYKEG SAQSASTESK FDQWFTQIRE ILNNPDSNTL DFLADFKSNL FTEEIYVYTP
KGDLKILPVN STALDFAYSI HSAVGNKCIG AKVNYKLVPI SHKLRSGDQV EIITSNKQKP
TEDWLNYALT AKAKSKIKDA LKEEKRKVAM DGKDVLERKL DHMKIANSQH NINELVQYYK
QPSPLDLYYQ IAVKNIDLKE LKQFNVLGDK LEAPKPVALK QPEHISEDHL KHMIPAKKDA
ELIIFGESSD KIAYKLANCC RPIPGDDVFG FITASEGLKI HRTNCPNAAQ LLANYGHRVV
KTKWVKNREI SFLTGLRIVG MDDVGVIHKI TNVISGELRV NIAGLTIESR EGLFEGLIKV
FVHDKEELDE LFEKLKKLDG IQSVSRLEDE