| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6716 |
|---|
| Symbol | |
|---|
| ID | 8362907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8409315 |
|---|
| End bp | 8410058 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644968848 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003126318 |
|---|
| Protein GI | 256425665 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3967] Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAG CAGGAAAAGT GGTACTGATC ACCGGTGGTG GTTCCGGTAT TGGTATGGAA
ACAGCCCGAT TATTTATACA GAAAGGAAAC CAGGTCATCA TTACCGGCAG AAGTAAAGAA
AAGCTGGAGA AAGCAGCCGC ACAGATAGGA GCAGCAGGGT ATTTCAGCTG TGATGTGACG
AGCGAACAGG AGGTACAGGC ATTGGTACAG TATATCACGG AGCAATATGG CAAACTGGAC
TTTCTGATGA ACAATGCAGG TTTGTCGTAT CTGCATCAGT TACATGATGA CACAGAAACG
TTTCTGAACG CTTCCCGCGA AATGACTACC AACTACCTGG CGGCTGTCAA TATCACTGCT
AAATTCCTTC CCTTGCTGAA AGAACAGCCG GAAGCAGCCA TTATCAACAT GTCTTCCATT
ACCGGTTTTG TACCCGCCTT TACCCTACCC ACCTACTCTG CCAGTAAAGC GGCTTTACAT
TCTTATTCAC AATCATTACG TCATAGTCTG TCCCAGGCAA CAAATATCAA AGTATTTGAA
GTGATGCCTT CACTGGTGGA TACCGAATTT ACCAGGGATA TTCCCACCAA AGAAAAGATC
ACACCGGAAG AAGTAGCCAC AGCTACACTC GACGGCATTG AAAAAGACCT GTATGAAATT
CATGTAGGCA CTACCGGTGC ACTGCATCAG CATTTTTTCA GTCAGGCAGA ACAGGCATTT
AAAACGTTGA ACAGGATAAG CTGA
|
|---|
| Protein sequence | MQTAGKVVLI TGGGSGIGME TARLFIQKGN QVIITGRSKE KLEKAAAQIG AAGYFSCDVT
SEQEVQALVQ YITEQYGKLD FLMNNAGLSY LHQLHDDTET FLNASREMTT NYLAAVNITA
KFLPLLKEQP EAAIINMSSI TGFVPAFTLP TYSASKAALH SYSQSLRHSL SQATNIKVFE
VMPSLVDTEF TRDIPTKEKI TPEEVATATL DGIEKDLYEI HVGTTGALHQ HFFSQAEQAF
KTLNRIS
|
|---|
| |