Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6268 |
Symbol | |
ID | 8362450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7900414 |
End bp | 7900926 |
Gene Length | 513 bp |
Protein Length | 170 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644968396 |
Product | Shikimate kinase |
Protein accession | YP_003125875 |
Protein GI | 256425222 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0703] Shikimate kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00441949 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.76442 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGAAAATTT TCTTACTCGG CTTTATGGGC GCCGGCAAAA CTTACTGGGG AAAACAGCTG GCAGAACACC TGTCACTGCC CTTCTATGAT CTGGATGATG TAATCGTCGA ATCAGAAGCA ATGTCCATCA GCGATATCTT TGCGACTAAA GGAGAAGATT ATTTTCGTCA GCAGGAAAAC TACTGGCTGA AAGAACTATC CCGCAATGAA AGCTTTGTAA TATCCTGTGG CGGCGGTGCT CCCTGCTTCC AGGATAACAT GGACATCATG AACGAGAACG GCGCTACCAT CTGGCTCAAT CCCAAATTAT CCCTGATCGT GGACCGCCTC AAACGTAAAA AGTCTAAACG TCCCCTGATC CAGGATCTCG ATGATGATGA ACTGCTTGGT TTCGTTGAAA AGAAACTCGC AGAACGTATT CCGTTCTACG AACAGGCACA GATCACCATC GCGGAATCTG AAACGATCAA CCTCGACTCT TTCACACAAA GACTGGCTGA TATCAAAGCA TAA
|
Protein sequence | MKIFLLGFMG AGKTYWGKQL AEHLSLPFYD LDDVIVESEA MSISDIFATK GEDYFRQQEN YWLKELSRNE SFVISCGGGA PCFQDNMDIM NENGATIWLN PKLSLIVDRL KRKKSKRPLI QDLDDDELLG FVEKKLAERI PFYEQAQITI AESETINLDS FTQRLADIKA
|
| |