Gene Cpin_6268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6268 
Symbol 
ID8362450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7900414 
End bp7900926 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content46% 
IMG OID644968396 
ProductShikimate kinase 
Protein accessionYP_003125875 
Protein GI256425222 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00441949 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.76442 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAAATTT TCTTACTCGG CTTTATGGGC GCCGGCAAAA CTTACTGGGG AAAACAGCTG 
GCAGAACACC TGTCACTGCC CTTCTATGAT CTGGATGATG TAATCGTCGA ATCAGAAGCA
ATGTCCATCA GCGATATCTT TGCGACTAAA GGAGAAGATT ATTTTCGTCA GCAGGAAAAC
TACTGGCTGA AAGAACTATC CCGCAATGAA AGCTTTGTAA TATCCTGTGG CGGCGGTGCT
CCCTGCTTCC AGGATAACAT GGACATCATG AACGAGAACG GCGCTACCAT CTGGCTCAAT
CCCAAATTAT CCCTGATCGT GGACCGCCTC AAACGTAAAA AGTCTAAACG TCCCCTGATC
CAGGATCTCG ATGATGATGA ACTGCTTGGT TTCGTTGAAA AGAAACTCGC AGAACGTATT
CCGTTCTACG AACAGGCACA GATCACCATC GCGGAATCTG AAACGATCAA CCTCGACTCT
TTCACACAAA GACTGGCTGA TATCAAAGCA TAA
 
Protein sequence
MKIFLLGFMG AGKTYWGKQL AEHLSLPFYD LDDVIVESEA MSISDIFATK GEDYFRQQEN 
YWLKELSRNE SFVISCGGGA PCFQDNMDIM NENGATIWLN PKLSLIVDRL KRKKSKRPLI
QDLDDDELLG FVEKKLAERI PFYEQAQITI AESETINLDS FTQRLADIKA