Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6157 |
Symbol | |
ID | 8362339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7766203 |
End bp | 7766769 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644968287 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003125766 |
Protein GI | 256425113 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.200683 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTCCTC CATTAGATAA TGAAATTTTT TTATTCAGGC AGATTGGGGA AGGAAATGAG ATTGCATTCC GTAAGGTTTA TTACCACTAT TACAGGCAAT TATATGGTTT CGTGCTCAAG GCTGTAAAGT CCGACCCTGT CACAGAAGAA ATTGTGCAGG AGACGTTTGC CCGTTTGTGG GAAAACCGCG CTGCTCTTGG AGAAAAAGGA TATTCTGCCC CCTGGCTCTT TCGTGTTGCT GCCAACCTCT CCTTTGATTA TATGAGGAAA GCCGCTCATG AAGCAAAATA TTTTAATCTG TTGTCAGCCT CTCCCGGTGA ACCTTCTGCC AATAATGTAG CCGACTATAT AGAGGGCGTA CAAAGCAACC ATCTTTTACA CGAGGCCATC GACAGTTTAC CTCCCCAGCG CCGCACCATT TTCCGGTTAT CAAGATTAAA AGGGCTCAGT CACCAGGAAA TTTCCCAGCA CCTCAATATT TCTGAAAATA CCGTTAAAAA CCAGCTGGTG ACCGCTTTAA AGGCTGTTCG CCAGTTCATG AACGATGCTA CCCGCCTCTT TTTTTAA
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Protein sequence | MVPPLDNEIF LFRQIGEGNE IAFRKVYYHY YRQLYGFVLK AVKSDPVTEE IVQETFARLW ENRAALGEKG YSAPWLFRVA ANLSFDYMRK AAHEAKYFNL LSASPGEPSA NNVADYIEGV QSNHLLHEAI DSLPPQRRTI FRLSRLKGLS HQEISQHLNI SENTVKNQLV TALKAVRQFM NDATRLFF
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