Gene Cpin_5884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5884 
Symbol 
ID8362065 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7476907 
End bp7478631 
Gene Length1725 bp 
Protein Length574 aa 
Translation table11 
GC content46% 
IMG OID644968023 
Productphosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 
Protein accessionYP_003125503 
Protein GI256424850 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1109] Phosphomannomutase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.830528 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAATA TTATTGAAAG TAAGGTATCA CAATGGCTGG ATGGCCAATT TGACGCGGAA 
ACCGTAGCCG CAGTCAAAAA ATTGCAGCAG GAGAACCCCG ATGAACTGGC TGACGCATTT
TACCGCAACC TGGAATTTGG CACAGGTGGT TTACGCGGTA TCATGGGAGT AGGTACAAAC
CGTATGAATA AATATACGGT AGGTATGGCT ACTCAGGGAT TTGCCAACTA CCTGAAACAG
ACCTTCACCG GAGAAATCAA GTTCGTTATT GCCCATGACA GCCGTAACAA CAGCCGCTAT
TTTGCAGAAG TAGCTGCTAA TGTACTGGCA GCCAACGGCA TCAAAGTATT CCTGTTTGAA
AGCCTCCGCC CTACTCCGGA ACTGTCTTTC GCTATCCGTC ACCTGGCCGC CAATGGTGGT
ATCGTACTGA CAGCGTCTCA CAATCCGAAA GAGTACAACG GTTACAAAGC TTACTGGAAC
GACGGCGCCC AGCTGGTACC TCCACACGAC AAAAATGTTA TCCGTGAAGT AGAAAAGATC
GCTTCTATTA ATGAAGTGAA ATGGTCCGGC GGCGAAGCCA ACATCACCCT GATAGGCAAA
GAGGTCGATG AAGCTTATCT CCAGATGCTG AAAGGACTCA GCATTCAGCC GGATGTTATT
AAAGAACAGC ACGATCTTAA AATAGTATAT ACCCCGATCC ACGGTACCGG TATCACCCTG
GCGCCTGAGA TCCTGAAACG TTATGGTTTC ACCAATGTAC ATGTGGTAGA AGAGCAATCC
ACTCCGGATG GTAACTTCCC TACGGTTGTT TATCCTAACC CGGAAGAATC TGAAGCCATG
AGCATTGGTC TGAAGAAAGC AAAAGAACTG GACGCGGCAA TCCTCCTGGG TACGGATCCG
GATTCTGACC GTGTAGGTAT TGCTGTGAAA GACCTGAAAG GAGAATGGGT ACTGCTGAAT
GGTAACCAGA CGGCGGTATT GCTGTTCAAC TATATTATAG AAGGCCGCAG ACAGAAAGGA
CTGGCAGGTA GCACAGACTA CGTTTGTAAA ACTGTCGTTA CTTCCGACCT GATCGACGTA
TTCGCTGCAC AGAACAACGT GAAATGCTAT AACGTACTGA CAGGCTTCAA ATGGATCGCT
GACCTGATCA GAGAAAAAGA AGGTAAAGAG CAGTTCATCT GTGGTGGTGA GGAATCTTAT
GGTTACATGA TTGGCGACAA CGTACGTGAT AAAGACGCTA TCGCTTCTGT AGCCCTGATC
TGTGAAATGG CTGCTTATGC GGCGAGCCAG GGAAGATCAC TGTATGAACA ACTGATCGAT
ATCTACGTAA AATACGGTTA TTATAAAGAG AACCTGATCT CCATTACCAA GAAAGGTATG
AAAGGAGCAG AGGAAATCGC TGACATGATG CGTGGTTATC GTGAGAATCC ACCAACCACT
ATCAACGGTT CTAAGGTAGT TACCTTATAT GATTATGAAC TGCAGCAGGT GAAGTCACTG
AACAACGGTG AAGTGAAGCC GATCAATCTC CCTAAATCCA ACGTACTGCA GTTTGTACTG
GAAGATGGCA GCAAGATCTC TGCACGTCCT TCAGGTACAG AACCTAAGAT CAAATTCTAC
TTCAGCGTAA ACCAGGCACT GGAAAATGCA GCTGGTTTTG ATGCTGCAAC CAAAGCGCTT
GATCAGAAAG TGGAGAATAT CATTAAAGAT ATGAAGCTGA AATAA
 
Protein sequence
MDNIIESKVS QWLDGQFDAE TVAAVKKLQQ ENPDELADAF YRNLEFGTGG LRGIMGVGTN 
RMNKYTVGMA TQGFANYLKQ TFTGEIKFVI AHDSRNNSRY FAEVAANVLA ANGIKVFLFE
SLRPTPELSF AIRHLAANGG IVLTASHNPK EYNGYKAYWN DGAQLVPPHD KNVIREVEKI
ASINEVKWSG GEANITLIGK EVDEAYLQML KGLSIQPDVI KEQHDLKIVY TPIHGTGITL
APEILKRYGF TNVHVVEEQS TPDGNFPTVV YPNPEESEAM SIGLKKAKEL DAAILLGTDP
DSDRVGIAVK DLKGEWVLLN GNQTAVLLFN YIIEGRRQKG LAGSTDYVCK TVVTSDLIDV
FAAQNNVKCY NVLTGFKWIA DLIREKEGKE QFICGGEESY GYMIGDNVRD KDAIASVALI
CEMAAYAASQ GRSLYEQLID IYVKYGYYKE NLISITKKGM KGAEEIADMM RGYRENPPTT
INGSKVVTLY DYELQQVKSL NNGEVKPINL PKSNVLQFVL EDGSKISARP SGTEPKIKFY
FSVNQALENA AGFDAATKAL DQKVENIIKD MKLK