Gene Cpin_5841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5841 
Symbol 
ID8362021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7421807 
End bp7423570 
Gene Length1764 bp 
Protein Length587 aa 
Translation table11 
GC content48% 
IMG OID644967980 
Productsignal peptide peptidase SppA, 67K type 
Protein accessionYP_003125461 
Protein GI256424808 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAGCT TTTTTAAAAT TTTCTTTGCC ACCCTTCTGG CCTTCGTCGT GATCCTCATT 
TTAGGGGTGA TCCTGCTGGC GGGGGTGATC GGCAGCGCTA TCAGCCCCGA AGTTGTTACC
CTGTCGCCTA ACAGCGTACT GGTCCTGGAA ACCAGTCAGC AATACAACGA ACAAAAAGTT
TCAAATCCCG TAAATGCCCT CCTGCGTCAG GAACCGAAAT CAGTACCTGG CCTGAACGAC
ATGATTCGTC TGATCAAACA TGCGGAAACT GACGACGACA TAAAAGGTAT CTATCTGAAA
GCGGAAGGTA ACGCTAACGG ATTTGCTACC AACGAAGAAG TCCGCAATGC ATTGCTGCGC
TTTAAACAGT CCGGCAAGTT TGTTTTTGCC TACGGCGAGG TAATGGACCA GAAGAGCTAT
TATATGGCTT CCCTCGCTGA CCGGGTATAT GTGCATCCTA AAGGCGGCGT GGAATTCAGC
GGTTTCTTTA CCCAGCTGAC TTTCCTGAAA GGTACCCTTG AGAAACTGGA GATTCAGCCA
CAGATTTTCT ATGATGGCCG TTTTAAAAGT GCTACTGAGC CTTTACGCGA AACGGAAATG
ACACTGGCGA ACCGTATTCA GACAAGCGCC TACCTGGGTG ACCTGTATGG CAATTTCCTG
AAGAATATCG GTACGGCCCG TAAAATAGAT ACTGCTTCCC TGCATCGTTA TGCTAATGAA
GGACTGATCC AGGAGGCGGC AGACGCATTG AAATATAAAC TGGTAGACGG TTTGAAATAC
AATGACCAGG TGATGGATGA AATTAAATCC AGACTGGGTC TGAAAGGATC TGACGACGTT
AACTTCGTAT CTGTATCTAA ATATATGGAT GCCGTTGACC TGACAGAAAA TAAGGGCGCC
GACAATAAAG TGGCCATTAT CTATGCAGAA GGTAATATAG TAGGAGGGGA CAGTGAAAAA
GACGTTACTA TCAGCAGCGG TCATTTTATC AAGTTGATCC GCGAAGCAAG ACAAGATAAA
GATGTAAAAG CCATCGTTTT CCGTGTGAAT TCACCAGGTG GTAGCGCCCT CGCTTCGGAA
TCGATCTGGC GTGAACTGGT GCTGGCTAAA AAGAGCAAAC CTGTGGTAGT GTCCATGGGG
GACTATGCAG CTTCCGGAGG CTATTATATC TCCTGTATGG CGGATTCTAT CTTCGCACAG
CCGAATACCC TGACCGGTTC TATCGGCGTA TTTGCCGTAT TGCCTAACCT GCAGGGATTC
TTTAAGAATA AGCTGGGTGT GACTTTCGAC GGGGTGAAGA CCGCACAATA CGCTGATCTG
GGCAATACTT CCCGTCCGCT GACTGACATC GAGAAGAAAT TCATCCAGAA CTCTGTGGAC
AGCATTTATA GCACCTTCAA AAGCCGCGTG GTAGAAGGCC GTAAACTGAG CGGTGCTGTG
GTAGATAGTA TCGCACAAGG TCGTGTATGG AGTGGTATCC AGGCAAAACA ACTGGGACTG
GTAGACCGTA TCGGTGGTAT CAATGAAGCA ATTGCCTGTG CCGCTAAACT GGCGAAGGTA
AGTTCTTACC GTCTTCGTGA ATATCCTGAA TCAGATGCTT CTTTGTCCCG TATGATGAAG
AGCTTTGGCG CCAGCGCCCA TGTGGAAGCT GCCGTTAAGA ACGAACTGGG TGAGCAGTAC
GACCTGTACC GCCAGATCAA GGAGATGAAG GAAATGAGCG GTGAGATCCA GGCGAAACTG
CCTTATGCGG TAGATATCCG ATAA
 
Protein sequence
MRSFFKIFFA TLLAFVVILI LGVILLAGVI GSAISPEVVT LSPNSVLVLE TSQQYNEQKV 
SNPVNALLRQ EPKSVPGLND MIRLIKHAET DDDIKGIYLK AEGNANGFAT NEEVRNALLR
FKQSGKFVFA YGEVMDQKSY YMASLADRVY VHPKGGVEFS GFFTQLTFLK GTLEKLEIQP
QIFYDGRFKS ATEPLRETEM TLANRIQTSA YLGDLYGNFL KNIGTARKID TASLHRYANE
GLIQEAADAL KYKLVDGLKY NDQVMDEIKS RLGLKGSDDV NFVSVSKYMD AVDLTENKGA
DNKVAIIYAE GNIVGGDSEK DVTISSGHFI KLIREARQDK DVKAIVFRVN SPGGSALASE
SIWRELVLAK KSKPVVVSMG DYAASGGYYI SCMADSIFAQ PNTLTGSIGV FAVLPNLQGF
FKNKLGVTFD GVKTAQYADL GNTSRPLTDI EKKFIQNSVD SIYSTFKSRV VEGRKLSGAV
VDSIAQGRVW SGIQAKQLGL VDRIGGINEA IACAAKLAKV SSYRLREYPE SDASLSRMMK
SFGASAHVEA AVKNELGEQY DLYRQIKEMK EMSGEIQAKL PYAVDIR