Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5809 |
Symbol | |
ID | 8361989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7381006 |
End bp | 7382043 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644967948 |
Product | TIM-barrel protein, nifR3 family |
Protein accession | YP_003125429 |
Protein GI | 256424776 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0243889 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGTAAAGA TCGACAATAT TGTGCTGCCT GATTTCCCCC TTCTTTTGGC GCCTATGGAA GACGTGAGTG ATCCGCCTTT CCGGGTAGTA TGTCGTGAGA ACGGGGCGGA CCTGTTATAT ACCGAATTCA TTTCCAGTGA AGGACTGGTG AAGGATACGG AGAAATGTCG CCGTAAACTG GCAATTTTCG ATGAAGAACG TCCTGCCGGA GTACAGATCT TCGGAGGTGA TGAAGGTAAA CTGTCGATGG CTGCCCGCAT TGTCGATATG ACCCAGCCCG ATCTGCTGGA TATCAATTTT GGTTGCCCGA TCAAGGGGAT CGTCAGTAAA GGCGCAGGCT CAGGGGTACT GAAAGACATT GATCTGATGG TCCGGCTTAC AGCAGCCTGC GTAAAGTCCA CAAAACTGCC CGTTACGGTC AAAACCCGTC TTGGCTGGGA CGAGGATACC CAAAACATCG AAGAGGTCGC AGAAAGGCTC CAGGACGTCG GTATTAAGGC ACTGGCTATC CATGGTCGTA CCCGTACCCA GATGTACAAG GGAGAAGCCA GCTGGGAGCT GATCGCTAAA GTAAAGAACA ACCCACGTAT ACATATTCCC ATCTTCGGGA ACGGAGATAT TGATAGTCCG CAGAAAGCCC TGGAATATAA AAACCGCTAC GGCGTAGACG GTATCATGAT CGGCAGGGCC GCTATCGGTT ATCCCTGGAT CTTCCGTGAA GTAAAACACT ATCTGCAGAC GGGGGAGATG CTACCTGCTC CGACACTGGA AGACCGTATC GCCGTTTGTA AACGTCAGCT GGAAAAATCT GTGCAATGGC GTGGCGAAGG TCATGGCATT TTCGCCATGC GCAAACATTA CTTCAATTAC CTGAAAGGGT TACCTGATTT CAAAGCATTC AGAAGCCGAC TGGTCACCCC GGAAGCATCT GCAGAGATCA TGGATGTACT GGATGAAATC GCGCAGGTGT ATGCCGGTTT TGAATTTGAC CGTAAGCCTA TTCAGCTGGT CAATTATCAT GAGAACTGTG CATTGTAA
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Protein sequence | MVKIDNIVLP DFPLLLAPME DVSDPPFRVV CRENGADLLY TEFISSEGLV KDTEKCRRKL AIFDEERPAG VQIFGGDEGK LSMAARIVDM TQPDLLDINF GCPIKGIVSK GAGSGVLKDI DLMVRLTAAC VKSTKLPVTV KTRLGWDEDT QNIEEVAERL QDVGIKALAI HGRTRTQMYK GEASWELIAK VKNNPRIHIP IFGNGDIDSP QKALEYKNRY GVDGIMIGRA AIGYPWIFRE VKHYLQTGEM LPAPTLEDRI AVCKRQLEKS VQWRGEGHGI FAMRKHYFNY LKGLPDFKAF RSRLVTPEAS AEIMDVLDEI AQVYAGFEFD RKPIQLVNYH ENCAL
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