Gene Cpin_5752 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5752 
Symbol 
ID8361932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7316965 
End bp7318998 
Gene Length2034 bp 
Protein Length677 aa 
Translation table11 
GC content46% 
IMG OID644967893 
ProductOmpA/MotB domain protein 
Protein accessionYP_003125374 
Protein GI256424721 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.219859 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.716064 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAGAA AACATTATAC CCTTCCTGCA TTGTTAAGTG CCTTGCTGGT AACGGGATTG 
TTTAATACCG CCAATGGACA GTACGTTATA AAAGAAGCCA ATAGTGAGGC TACCCTATAC
AATTACGCAG CAGCTATTCC ATTATACCAG AAAGCATATA AGAAGAAAGA AACAGTAACA
GCGGCGCGCG GACTGGCCAC CAGTTACCGT CTGCTGAAAG ATTATCCTGC AGCAGCTACC
TGGTATGGAA AACTGGTAGC GATGCCGGAA CATACTGCCG AGGATGAACT GTATTACGCA
GCAATCCTCA TGAATAATGA ACAATATAGT ACTGCAAAAG AGGTGCTGAA TGGTTACCTG
TCTAAGACGC CTGGCGATAT ACTCGCTAAA AGTATGCAGG CGGGTTGTGA CAGCGCTTCC
GCATGGACGG CAGTTCCGGT AAGGGGAGAC CTGGAAAACC TGAAAGGACT CAACAGTGAA
TGGTCTGACT GGAGTACGGC TTTCAATAAC GGAAAAGTCA TCTTTGCTTC GGATCGTCCT
TACGATTCCC TGCGCCGCGA TATGTTGTTC AATACCAGCA ATATCAAAAA GAAATACTGT
GGTTATACCG GCAATAGTTA CCTGCACCTT TATGAGAGCA ATGGTCTGGA CAGCGGCACG
ACCAGACTGC TGGTACGTGA CGTGAATGGT GATTACCATA GCGCGGATGC AAGTTATACG
GCGAACGGAG AAACCTTCTA TTATGCAGTA ACGGAACTGG CCAGAAAGAA AGGCTCGTTG
CTGGGTAAGG AAAATCCTTA TACCCTCAAC ATCGAGATCA GGGGACAGCA ACGCGATACG
GCAAGTGGTG GCTGGAAACA ACTGCCGGTT TTCCCTTTCA ATGAAATATT CAATCATTCC
ATCGGTGATC CTTACATAGC TCCTGATGGT AAAACCCTCT ACTTTGTTGC TGATTATGGC
GATAAAGGAA ATGGTGGCAC TGATATCTAT TACAGCACCC TGGACATAAA TGGTCAGTGG
CAGACGCCGG TGAACATGGG TCCGGAGATT AATAGTGCAG GCAATGAACG TTCTCCGATG
TTTGATAACA ACGGGGTGTT CTATTTCTCT ACAGACGGAC GTCCTGGTCT TGGTGGATTA
GACATCTTCC GTGCGGTAAA AGAAAAAAGC ACCTGGGCAG TCCGTAATAT GGGCCTGCCG
GTAAACAGTG CACAGGATGA TTTTGCGCCT GCCTATAATG GTACCAATAC GATGTATTTT
TCTTCCAACA GAAAAGGTGG AAAGGGTAGT GACGACCTCT ATCGTTTTAC ACCTGCGAAG
ATCCTGATCT TCTCCCTGGA AGGTAAAGCC ATCGACAAAA AGACCAATCA GCCACTCGGA
GATGCGGAAG TGACCCTGGC GAATAAGGGC ACCGGAAAAG TGTTAAAAGC ATTTACTGAT
AACGAAGGTA ATTTTCATTT TGCATTGGAT AGTTTAACAG CCTATGCGCT GGATGGCCAG
AAGCCACTGT TTAGACCAGA ATTGGGGGTT GCGGTGACTA CAAACGGGTT GACAGAATCC
GCAGTTTTAC ACCGTGACCT TTATCTGGAA AAAATCGAAG TAGAAACTGT GGTGAATAAA
CCGAAAGAGC CGGTTCCGGC GAAGGGAATT GGTGCACCGC GTAAGATTGA GCTGGGTAAC
AAGTTCAATC CACAGAACAT CTATTTCGAT CTGGGTAAGG CAGATATCCG TCCTGACGTA
GCGAAAGAAC TGGATAAACT GATCGCCCTG ATGAAGGAAA ATGCCAACTG GAAGGTAGAT
ATGTCATTCC ATACAGACAG CCGCTCGGAT GATAACTATA ACATGAAACT CTCCCAGCGT
CGTGCGACTT CAACATTGAA TTATTTCCTT TCCAAAGGAA TTGATAAAAA ACGTCTGACT
GCTAAAGGTT ATGGCGAGAC CAAACTGATT AACCGTTGTG CGAATGGTGT GAATTGTACG
GAGGAAGAAC ACAAGGCAAA CAGAAGAGCG GAATTCACCG TTCTGGAACA CTAA
 
Protein sequence
MNRKHYTLPA LLSALLVTGL FNTANGQYVI KEANSEATLY NYAAAIPLYQ KAYKKKETVT 
AARGLATSYR LLKDYPAAAT WYGKLVAMPE HTAEDELYYA AILMNNEQYS TAKEVLNGYL
SKTPGDILAK SMQAGCDSAS AWTAVPVRGD LENLKGLNSE WSDWSTAFNN GKVIFASDRP
YDSLRRDMLF NTSNIKKKYC GYTGNSYLHL YESNGLDSGT TRLLVRDVNG DYHSADASYT
ANGETFYYAV TELARKKGSL LGKENPYTLN IEIRGQQRDT ASGGWKQLPV FPFNEIFNHS
IGDPYIAPDG KTLYFVADYG DKGNGGTDIY YSTLDINGQW QTPVNMGPEI NSAGNERSPM
FDNNGVFYFS TDGRPGLGGL DIFRAVKEKS TWAVRNMGLP VNSAQDDFAP AYNGTNTMYF
SSNRKGGKGS DDLYRFTPAK ILIFSLEGKA IDKKTNQPLG DAEVTLANKG TGKVLKAFTD
NEGNFHFALD SLTAYALDGQ KPLFRPELGV AVTTNGLTES AVLHRDLYLE KIEVETVVNK
PKEPVPAKGI GAPRKIELGN KFNPQNIYFD LGKADIRPDV AKELDKLIAL MKENANWKVD
MSFHTDSRSD DNYNMKLSQR RATSTLNYFL SKGIDKKRLT AKGYGETKLI NRCANGVNCT
EEEHKANRRA EFTVLEH