Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5752 |
Symbol | |
ID | 8361932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7316965 |
End bp | 7318998 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644967893 |
Product | OmpA/MotB domain protein |
Protein accession | YP_003125374 |
Protein GI | 256424721 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.219859 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.716064 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATAGAA AACATTATAC CCTTCCTGCA TTGTTAAGTG CCTTGCTGGT AACGGGATTG TTTAATACCG CCAATGGACA GTACGTTATA AAAGAAGCCA ATAGTGAGGC TACCCTATAC AATTACGCAG CAGCTATTCC ATTATACCAG AAAGCATATA AGAAGAAAGA AACAGTAACA GCGGCGCGCG GACTGGCCAC CAGTTACCGT CTGCTGAAAG ATTATCCTGC AGCAGCTACC TGGTATGGAA AACTGGTAGC GATGCCGGAA CATACTGCCG AGGATGAACT GTATTACGCA GCAATCCTCA TGAATAATGA ACAATATAGT ACTGCAAAAG AGGTGCTGAA TGGTTACCTG TCTAAGACGC CTGGCGATAT ACTCGCTAAA AGTATGCAGG CGGGTTGTGA CAGCGCTTCC GCATGGACGG CAGTTCCGGT AAGGGGAGAC CTGGAAAACC TGAAAGGACT CAACAGTGAA TGGTCTGACT GGAGTACGGC TTTCAATAAC GGAAAAGTCA TCTTTGCTTC GGATCGTCCT TACGATTCCC TGCGCCGCGA TATGTTGTTC AATACCAGCA ATATCAAAAA GAAATACTGT GGTTATACCG GCAATAGTTA CCTGCACCTT TATGAGAGCA ATGGTCTGGA CAGCGGCACG ACCAGACTGC TGGTACGTGA CGTGAATGGT GATTACCATA GCGCGGATGC AAGTTATACG GCGAACGGAG AAACCTTCTA TTATGCAGTA ACGGAACTGG CCAGAAAGAA AGGCTCGTTG CTGGGTAAGG AAAATCCTTA TACCCTCAAC ATCGAGATCA GGGGACAGCA ACGCGATACG GCAAGTGGTG GCTGGAAACA ACTGCCGGTT TTCCCTTTCA ATGAAATATT CAATCATTCC ATCGGTGATC CTTACATAGC TCCTGATGGT AAAACCCTCT ACTTTGTTGC TGATTATGGC GATAAAGGAA ATGGTGGCAC TGATATCTAT TACAGCACCC TGGACATAAA TGGTCAGTGG CAGACGCCGG TGAACATGGG TCCGGAGATT AATAGTGCAG GCAATGAACG TTCTCCGATG TTTGATAACA ACGGGGTGTT CTATTTCTCT ACAGACGGAC GTCCTGGTCT TGGTGGATTA GACATCTTCC GTGCGGTAAA AGAAAAAAGC ACCTGGGCAG TCCGTAATAT GGGCCTGCCG GTAAACAGTG CACAGGATGA TTTTGCGCCT GCCTATAATG GTACCAATAC GATGTATTTT TCTTCCAACA GAAAAGGTGG AAAGGGTAGT GACGACCTCT ATCGTTTTAC ACCTGCGAAG ATCCTGATCT TCTCCCTGGA AGGTAAAGCC ATCGACAAAA AGACCAATCA GCCACTCGGA GATGCGGAAG TGACCCTGGC GAATAAGGGC ACCGGAAAAG TGTTAAAAGC ATTTACTGAT AACGAAGGTA ATTTTCATTT TGCATTGGAT AGTTTAACAG CCTATGCGCT GGATGGCCAG AAGCCACTGT TTAGACCAGA ATTGGGGGTT GCGGTGACTA CAAACGGGTT GACAGAATCC GCAGTTTTAC ACCGTGACCT TTATCTGGAA AAAATCGAAG TAGAAACTGT GGTGAATAAA CCGAAAGAGC CGGTTCCGGC GAAGGGAATT GGTGCACCGC GTAAGATTGA GCTGGGTAAC AAGTTCAATC CACAGAACAT CTATTTCGAT CTGGGTAAGG CAGATATCCG TCCTGACGTA GCGAAAGAAC TGGATAAACT GATCGCCCTG ATGAAGGAAA ATGCCAACTG GAAGGTAGAT ATGTCATTCC ATACAGACAG CCGCTCGGAT GATAACTATA ACATGAAACT CTCCCAGCGT CGTGCGACTT CAACATTGAA TTATTTCCTT TCCAAAGGAA TTGATAAAAA ACGTCTGACT GCTAAAGGTT ATGGCGAGAC CAAACTGATT AACCGTTGTG CGAATGGTGT GAATTGTACG GAGGAAGAAC ACAAGGCAAA CAGAAGAGCG GAATTCACCG TTCTGGAACA CTAA
|
Protein sequence | MNRKHYTLPA LLSALLVTGL FNTANGQYVI KEANSEATLY NYAAAIPLYQ KAYKKKETVT AARGLATSYR LLKDYPAAAT WYGKLVAMPE HTAEDELYYA AILMNNEQYS TAKEVLNGYL SKTPGDILAK SMQAGCDSAS AWTAVPVRGD LENLKGLNSE WSDWSTAFNN GKVIFASDRP YDSLRRDMLF NTSNIKKKYC GYTGNSYLHL YESNGLDSGT TRLLVRDVNG DYHSADASYT ANGETFYYAV TELARKKGSL LGKENPYTLN IEIRGQQRDT ASGGWKQLPV FPFNEIFNHS IGDPYIAPDG KTLYFVADYG DKGNGGTDIY YSTLDINGQW QTPVNMGPEI NSAGNERSPM FDNNGVFYFS TDGRPGLGGL DIFRAVKEKS TWAVRNMGLP VNSAQDDFAP AYNGTNTMYF SSNRKGGKGS DDLYRFTPAK ILIFSLEGKA IDKKTNQPLG DAEVTLANKG TGKVLKAFTD NEGNFHFALD SLTAYALDGQ KPLFRPELGV AVTTNGLTES AVLHRDLYLE KIEVETVVNK PKEPVPAKGI GAPRKIELGN KFNPQNIYFD LGKADIRPDV AKELDKLIAL MKENANWKVD MSFHTDSRSD DNYNMKLSQR RATSTLNYFL SKGIDKKRLT AKGYGETKLI NRCANGVNCT EEEHKANRRA EFTVLEH
|
| |