| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5665 |
|---|
| Symbol | |
|---|
| ID | 8361845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7225281 |
|---|
| End bp | 7226054 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644967808 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003125289 |
|---|
| Protein GI | 256424636 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.135845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATA AGATAGAAAA GTCAACGAAC GAACAGCTTG TGGCCCTTGT TACCGGGGCC
AACCAGGGAG TAGGTTTCCA GATTGCCAAA GAATTGTCAG CGAATGGCTA TTATGTATAC
CTCGGGTCGC GTAACCTGAG CAACGGAGAA AAGGCAGCTG CTGAAATTGG CGGCGCTACC
TATGCTATCG AGTTGGACGT TACGAAGCAG GCGACCATTA ATGCGGCAGT AGAACGTATC
ATGAAAGAAC AGGGGCGCCT GGATCTGCTG GTGAACAATG CAGGTATCGC ACATGCCGGA
ACAACTGCGC GTACGCCGGA AGAAATGGTA GCGAAAAGCC GGCCCAGCAC AGTGTCAATT
GACGAGGTGC GAACCGTCTG GGATACCAAT GTATTCGCCG TTATTGCCGT TACCCAGGCA
GCCATACCCT TACTGCGGAA ATCAAAGGCC GGCCGTATCG TGAATGTATC CAGCGGATTA
GGTTCCCTCA CCTGGATCTC AGATCCTACA TGTTGGGCCA GAGAGCATTT TGGTATCGTC
TATGCGGCTT CCAAAACAGC CCTCAATGCG GTTACCCTTG CCTTTGCCAT GGAGCTTGAA
AAAGAGAATA TCAAGGTGAA TGCAACAAGT CCGGGTTATA CAGCGACCGC TTTGAATAAT
TTCCAGGGTA CCGATAGTCT GGAAGTAGGC TCCCGGGAAC CAGTGCGTGT AGCATTGGAG
ACGGATGGCC CAACCGGAGG TTTTACCGGT CCGGACGGCC CCTTACCCTG GTAA
|
|---|
| Protein sequence | MENKIEKSTN EQLVALVTGA NQGVGFQIAK ELSANGYYVY LGSRNLSNGE KAAAEIGGAT
YAIELDVTKQ ATINAAVERI MKEQGRLDLL VNNAGIAHAG TTARTPEEMV AKSRPSTVSI
DEVRTVWDTN VFAVIAVTQA AIPLLRKSKA GRIVNVSSGL GSLTWISDPT CWAREHFGIV
YAASKTALNA VTLAFAMELE KENIKVNATS PGYTATALNN FQGTDSLEVG SREPVRVALE
TDGPTGGFTG PDGPLPW
|
|---|
| |