Gene Cpin_5604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5604 
Symbol 
ID8361781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7154289 
End bp7155299 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content47% 
IMG OID644967747 
Productglycosyl transferase group 1 
Protein accessionYP_003125231 
Protein GI256424578 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.609172 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAG CCGTTCTTGC GCCGATCAGC TGGCGCACGC CCCCAAAGCA ATATGGCCCC 
TGGGAACAGG TAGCCTCTGT GCTTACCGAA GGATTAGTAC ACCAGGGGCT CGATGTGACA
CTTTTCGCTA CCGGCGATTC CATTACCAAT GCAAAACTGT CTTCCGTCAG AGAACACTCT
CTTGGCGATG AACCTGGCGA TTTTAAAGTA TGGGAATGTC TACATATCTC CTCATTGATG
GAACGTGCCG GGGAATTTGA TCTCATTCAC AGTCATTTCG ACTTTCTGCC ATTGACCTGG
TCCCGGGTGA TTAAAACACC TATGCTGACC ACTATTCATG GTTTCTCCTC TCCTGCTATT
CTTCCGGTAT ATCAGAAATA TAACGGTACG ACACACTACG TCTCTATCAG TAACAGTGAC
CGCGATCCTT CACTGACCTA CATCGATACC GTATATAACG GACTGAATGA AACCTTGTTT
TCTTTTACGG CTACGCCGGA TGACTATCTG CTGAGTTTTG GACGGATACA CCCCGAAAAA
GGGACGCATC TGACCATTGA GATTGCCAGG GAAGCGGGTA TGCGTTTAAT CATCTGCGGA
CTGATTCAGG ACGAAAACTA TTTCCGGGAA AAGATCGCCC CACATATCGA TAACAGGCAG
GTGATCTATA AAGGGAATGT AGGTCCGGAA GACCGGAACA ATATCCTCGG AAAAGCAAAA
GCATTACTGC ACCCGGTCCT GTTCAATGAA CCATTCGGGT TAAGTATTGC GGAAGCCATG
ATGTGTGGTA CGCCGGTCAT CGCATTTGAC AGAGGCGCCA TGAAAGAGCT GATTACAGAC
GCTAAAACAG GATTCCTTGT AAAGAATACA GCGGAAGCAG TATTGGCCGT AAAACAGGCG
GATAATATTC TCAGAAACGA TTGCCGCGAA CATTCCCTGG CCAGGTTCAG CCAGGGAAAG
ATGGTCTCAC ATTATATAGA AGTCTATAAA CGTATATTGG GTACTCACTG A
 
Protein sequence
MKIAVLAPIS WRTPPKQYGP WEQVASVLTE GLVHQGLDVT LFATGDSITN AKLSSVREHS 
LGDEPGDFKV WECLHISSLM ERAGEFDLIH SHFDFLPLTW SRVIKTPMLT TIHGFSSPAI
LPVYQKYNGT THYVSISNSD RDPSLTYIDT VYNGLNETLF SFTATPDDYL LSFGRIHPEK
GTHLTIEIAR EAGMRLIICG LIQDENYFRE KIAPHIDNRQ VIYKGNVGPE DRNNILGKAK
ALLHPVLFNE PFGLSIAEAM MCGTPVIAFD RGAMKELITD AKTGFLVKNT AEAVLAVKQA
DNILRNDCRE HSLARFSQGK MVSHYIEVYK RILGTH