Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5576 |
Symbol | |
ID | 8361753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 7120600 |
End bp | 7121661 |
Gene Length | 1062 bp |
Protein Length | 353 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644967720 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003125204 |
Protein GI | 256424551 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.110033 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACG ATCTTATCAA ACAACAAACA CTACTATTAT TCGCAGGTAT TGTGATAACG CTATCCGCCT GTGCAACGTC TGCATCTGAC AAAAAACAGG ACAATACGAT AGCAGCCGCT CCCGGTATTC CCGTGGATGC GATGATACTC AAACCGGAAA ACCTTTCCGA AAACATGGAG ATTTCCGGTA CACTGGCGGC CGTACAGGAA GTCAATATCA TGAGTGAACT AAGCAAAAAA GTCAGCACGG TATACGCAGC AGAAGGTAAA CAGGTAGCTG CCGGTATACT ATTGTTCAAA CTCGATGATG CGGATTTACA GGCACAACTC GACCAATATC TGCAACAGGA AAAGCTGGCG ATCATCAATG AACGCCGCCT TGCAGATCTG ATCGCCAATC AGGCAGCCAT ACAACAGGAC TACGACCAGG CATTGACCAG TTTACGCGTA TTACAGGCAC AGATCAGACA GATCAGGGTG AATATCGAGA AAACGCGTAT AACGGCCCCA TTTGCCGGTA AAATAGGCTT AGTGAATATA CATCCCGGCG CCCTGGTCAC ACCGGGCCAG ACACTCACTA CCCTGGAAGA TAAAAGCAGG ATAAAAGTGG ACTTCTATAT CCCTGAAAAA TATGCCGCCA ATTTCAAAAC CGGCGATCCG ATTCACTTCA AAGTAGAGTC CGGCAACAAA GAATATGACG GTACCATCAT CGCACAGGAA GCAAAACTGA ACAATGATAC CCGTACCCTG CTGCTCCGCG CCATTACCGG CAATGCAGAC GGTGAACTGC TCCCCGGTCA GAGCGCCAGG GTATCTGTGA GTCTGCATAA CGTAAAAGAC GCTGTAATGG TACCTAATCA GGCATTGATG CCTTCAGCAG CCGGCTACAG TGTATTTGTG ATAAAAAATG GCCAGGCAGC TATCAGAACT GTTAAAACAG GCGAACGGAA TGCCAATACC ATTCATATCA CCGAAGGACT GAGCGCTGGC GATACAGTAG TCACCAGTAA CATGTTGCGC CTCTCACCTG GCGCAGCTGT TCAATTTACT TCTATTAAAT AA
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Protein sequence | MSNDLIKQQT LLLFAGIVIT LSACATSASD KKQDNTIAAA PGIPVDAMIL KPENLSENME ISGTLAAVQE VNIMSELSKK VSTVYAAEGK QVAAGILLFK LDDADLQAQL DQYLQQEKLA IINERRLADL IANQAAIQQD YDQALTSLRV LQAQIRQIRV NIEKTRITAP FAGKIGLVNI HPGALVTPGQ TLTTLEDKSR IKVDFYIPEK YAANFKTGDP IHFKVESGNK EYDGTIIAQE AKLNNDTRTL LLRAITGNAD GELLPGQSAR VSVSLHNVKD AVMVPNQALM PSAAGYSVFV IKNGQAAIRT VKTGERNANT IHITEGLSAG DTVVTSNMLR LSPGAAVQFT SIK
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