Gene Cpin_5576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5576 
Symbol 
ID8361753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7120600 
End bp7121661 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content48% 
IMG OID644967720 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_003125204 
Protein GI256424551 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.110033 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACG ATCTTATCAA ACAACAAACA CTACTATTAT TCGCAGGTAT TGTGATAACG 
CTATCCGCCT GTGCAACGTC TGCATCTGAC AAAAAACAGG ACAATACGAT AGCAGCCGCT
CCCGGTATTC CCGTGGATGC GATGATACTC AAACCGGAAA ACCTTTCCGA AAACATGGAG
ATTTCCGGTA CACTGGCGGC CGTACAGGAA GTCAATATCA TGAGTGAACT AAGCAAAAAA
GTCAGCACGG TATACGCAGC AGAAGGTAAA CAGGTAGCTG CCGGTATACT ATTGTTCAAA
CTCGATGATG CGGATTTACA GGCACAACTC GACCAATATC TGCAACAGGA AAAGCTGGCG
ATCATCAATG AACGCCGCCT TGCAGATCTG ATCGCCAATC AGGCAGCCAT ACAACAGGAC
TACGACCAGG CATTGACCAG TTTACGCGTA TTACAGGCAC AGATCAGACA GATCAGGGTG
AATATCGAGA AAACGCGTAT AACGGCCCCA TTTGCCGGTA AAATAGGCTT AGTGAATATA
CATCCCGGCG CCCTGGTCAC ACCGGGCCAG ACACTCACTA CCCTGGAAGA TAAAAGCAGG
ATAAAAGTGG ACTTCTATAT CCCTGAAAAA TATGCCGCCA ATTTCAAAAC CGGCGATCCG
ATTCACTTCA AAGTAGAGTC CGGCAACAAA GAATATGACG GTACCATCAT CGCACAGGAA
GCAAAACTGA ACAATGATAC CCGTACCCTG CTGCTCCGCG CCATTACCGG CAATGCAGAC
GGTGAACTGC TCCCCGGTCA GAGCGCCAGG GTATCTGTGA GTCTGCATAA CGTAAAAGAC
GCTGTAATGG TACCTAATCA GGCATTGATG CCTTCAGCAG CCGGCTACAG TGTATTTGTG
ATAAAAAATG GCCAGGCAGC TATCAGAACT GTTAAAACAG GCGAACGGAA TGCCAATACC
ATTCATATCA CCGAAGGACT GAGCGCTGGC GATACAGTAG TCACCAGTAA CATGTTGCGC
CTCTCACCTG GCGCAGCTGT TCAATTTACT TCTATTAAAT AA
 
Protein sequence
MSNDLIKQQT LLLFAGIVIT LSACATSASD KKQDNTIAAA PGIPVDAMIL KPENLSENME 
ISGTLAAVQE VNIMSELSKK VSTVYAAEGK QVAAGILLFK LDDADLQAQL DQYLQQEKLA
IINERRLADL IANQAAIQQD YDQALTSLRV LQAQIRQIRV NIEKTRITAP FAGKIGLVNI
HPGALVTPGQ TLTTLEDKSR IKVDFYIPEK YAANFKTGDP IHFKVESGNK EYDGTIIAQE
AKLNNDTRTL LLRAITGNAD GELLPGQSAR VSVSLHNVKD AVMVPNQALM PSAAGYSVFV
IKNGQAAIRT VKTGERNANT IHITEGLSAG DTVVTSNMLR LSPGAAVQFT SIK