| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5518 |
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| Symbol | |
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| ID | 8361695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 7039532 |
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| End bp | 7040314 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967664 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_003125148 |
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| Protein GI | 256424495 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000468902 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0104317 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAAG ACATCTTAAA AGGAAAAGTC GCACTGGTGA GCGGCGGAGC AACAGGCATC
GGATTCGCAA CAGCAAAACT ATACCTTGAA AACGGGGCTA AAGTAGTCAT CGCAGGACGC
AGACAGGAAC AAGGCGAAAC AGCCCTGGCT ACCCTCAGAC AAATCAGTCC TGATATTACC
TTTATCCAGG CAGATGTTTC CAAAGCAGCA GATGTAAAAC GACTGATCAG TGAAACCGTC
CGCATCCACG GCAGTCTTGA TATTGCTTTC AACAACGCTG GTATTGAAGG TAATTTCGCT
CCTATTGATG ACATGAGTGA AGAAGATTTC GACGCCATTA TCGACATCAA TCTGAAAGGG
ATATGGCTCT CCTGTAAACA TGAAATCGAA CAATTCAGAA AACAAGGCTC CGGAGGCGTC
ATTGTAAACA CCTCTTCCTG GCTCTCTGTA GGCGCATTTC CTGGCTCAGG GGCTTATTCT
GCCAGTAAGG CTGCCCTAGA TGCATTGACA CGCGTATTAG CTGTAGAAAC AGCCTCCGCT
AATATCCGGG TGAATAACGT CCGTCCGGGT TATATCCAGA CGCCTATGTT TGATCGTTTC
TTCCCTGCCG GTGATGAAGC TAAAAAAGAA CCGGTGAAGA AACAGGCTCC TATCGGTCGT
TTCGCTGCAT CAGCTGAAAT CGGTGAACTG GTCCTCTGGT TAAGCAGTCC CGCTTCTTCT
TTTATCACTG GTGAAAGTAT ACTAGCAGAT GGAGGATTAG CCATTCCCGG ACAACGACAA
TAA
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| Protein sequence | MAQDILKGKV ALVSGGATGI GFATAKLYLE NGAKVVIAGR RQEQGETALA TLRQISPDIT
FIQADVSKAA DVKRLISETV RIHGSLDIAF NNAGIEGNFA PIDDMSEEDF DAIIDINLKG
IWLSCKHEIE QFRKQGSGGV IVNTSSWLSV GAFPGSGAYS ASKAALDALT RVLAVETASA
NIRVNNVRPG YIQTPMFDRF FPAGDEAKKE PVKKQAPIGR FAASAEIGEL VLWLSSPASS
FITGESILAD GGLAIPGQRQ
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