Gene Cpin_5499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5499 
Symbol 
ID8361676 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7013732 
End bp7014307 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content46% 
IMG OID644967645 
Productputative outer membrane protein 
Protein accessionYP_003125129 
Protein GI256424476 
COG category[S] Function unknown 
COG ID[COG3652] Predicted outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.234024 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.000160663 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAAAGC TCACTTTTAT TGCCGCTACA ATGCTGGCTG CCTGGATGTT TCAGGCTTGT 
AATTCAGGAA ACACAGAAGC CAAACACGAA GATGCTGTAG ATAGTGCGCA GGCAGTAAAT
AAAGAAACCG CTCCTGTAGA TAAAGAATCA TCTGACTTCG CAGTAAAAGC TGCTGACGGC
GGCATGCTGG AAGTACAGGC TGGTAAACTG GCACAGGAAA AAGGTACAAC ACAGCGTATC
AAGGATTTTG GTGCACTGCT GGTGCGTGAT CACTCTAAAG CGGGCGACGA ACTGAAGGGA
CTGGCGACTA CTAAGAATAT TACCCTGCCA GATAGTGTAG GGTCCGACTA TTCTGAACAC
CTGAGAGACA TGAGTAAACT CTCCGGTAAA GAGTTTGACA AACACTTCAT CGACATGATG
GTAAATGATC ATGATAAAGA TGTAGATATG TTTGACAAAG CGTCTCAGAA CCTGACTGAT
CCGGACCTGA AAACATGGGC AGGTAACACA TTGCCTACGC TGAAAGCACA CCAGGATACC
GCTAAGGCGA TCCAGGATGC GATGAAGAAG AAATAG
 
Protein sequence
MKKLTFIAAT MLAAWMFQAC NSGNTEAKHE DAVDSAQAVN KETAPVDKES SDFAVKAADG 
GMLEVQAGKL AQEKGTTQRI KDFGALLVRD HSKAGDELKG LATTKNITLP DSVGSDYSEH
LRDMSKLSGK EFDKHFIDMM VNDHDKDVDM FDKASQNLTD PDLKTWAGNT LPTLKAHQDT
AKAIQDAMKK K