| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5490 |
|---|
| Symbol | |
|---|
| ID | 8361667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7000857 |
|---|
| End bp | 7002095 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644967636 |
|---|
| Product | transposase IS4 family protein |
|---|
| Protein accession | YP_003125120 |
|---|
| Protein GI | 256424467 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3385] FOG: Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0292908 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA GTAAATTTTT TTCCGGACAG CCGATTTTTA ATCAACTACT TTCTTTTATA
CCAACCACGT TGATAGATAA AGTCTGTAGA GAGACAAACG CAGATTACTA TTATAAGCAT
TTTAAGGCTT TTGACCATTT GGTAACAATG CTATTTAGTA GTTTTCATCA GTGTACTTCA
TTACGAGAGC TTCATACAGG ATTGTTAGCC AACCAGCATC GGCTTCACCA TTTGGGCATT
AAACATACCC CGCGTCGAAG CACTATTTCC GATGCTAACA GGACGCGTCC GGTGGCGTTT
TTTGAAAAGC TTTATCATCG TCTATATAAC CATCATTATC AAGCGTTTTC CCCGGACAGC
CGAAAGAGAA AATCGTTGGT TGACCGGTTA TTCATAGTGG ACTCGACGAC GGTCAGCCTA
TTTTCTAATG TAATGAAGGG GGCAGGTGTA ATTAGAATGG ACGGCAGAAA GAAGGGAGGA
ATAAAGGCGC ACGTATTGAT GACGGCCAAA ACAGAACTAC CAAGCTTTAC TATTCTGACG
GAAGCTGCCA AAAATGATAG AATCATTATG CCACAGTTAG AGCTCTTGCC AGGTTCTATA
ATAGCCATGG ATAGAGCTTA TGTGAACTAT AAACTCATGA AGGAATGGAC TGAAAAAGAG
ATCACGTGGG TAACTCGTGT AACCAAGAGT ATGAAAATAA AATTATTGAC ACGAAACAGA
TTAAAAATAC TCAATAAAAG AAAAGGTATC CTAAAAGATT GGGTTATTCA ACTAGGTAAC
CCTCTAACAG AGGAGAAAAG TCCTGTACAG ACGGCGCGTG TAATCAGCAT TTACGATAGA
AATACAAAAA AGAAAATACA TCTGTTAACA AACAATTTTA CTTATACGCC GACAACGATC
AGGAAATTGT ATCAAAAGCG ATGGGCAATC GAAATGCTTT TTAAAAGAAT TAAGCAGAAC
TCTCAATTAA ACAATTTTTT AGGTGAAAAC AAAAATGCTA TAAGTATACA GCTCTGGTGC
ACGCTAATAA AGGATTTACT GACAAAGATC GTAAAAGACA AGCTGACAGA GAAAGGGAGT
AAAAAATGGT CTTTTAGTAA CCTAACTGGC TTTCTAAGGT TACATCTTTA CACTTATATC
CACCTAATGA ATTTTCTGGC AGAACCCGAG TATGCACTTT TACAGCATAA TAAGGGGCCA
GATCAGATAA ACCTGCAATT GAAATTATTC TCCTTTTAA
|
|---|
| Protein sequence | MSKSKFFSGQ PIFNQLLSFI PTTLIDKVCR ETNADYYYKH FKAFDHLVTM LFSSFHQCTS
LRELHTGLLA NQHRLHHLGI KHTPRRSTIS DANRTRPVAF FEKLYHRLYN HHYQAFSPDS
RKRKSLVDRL FIVDSTTVSL FSNVMKGAGV IRMDGRKKGG IKAHVLMTAK TELPSFTILT
EAAKNDRIIM PQLELLPGSI IAMDRAYVNY KLMKEWTEKE ITWVTRVTKS MKIKLLTRNR
LKILNKRKGI LKDWVIQLGN PLTEEKSPVQ TARVISIYDR NTKKKIHLLT NNFTYTPTTI
RKLYQKRWAI EMLFKRIKQN SQLNNFLGEN KNAISIQLWC TLIKDLLTKI VKDKLTEKGS
KKWSFSNLTG FLRLHLYTYI HLMNFLAEPE YALLQHNKGP DQINLQLKLF SF
|
|---|
| |