Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5405 |
Symbol | |
ID | 8361582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 6911311 |
End bp | 6912132 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644967552 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_003125036 |
Protein GI | 256424383 |
COG category | [R] General function prediction only |
COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0135056 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.0706675 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAAGTA AAATATGGTT TATTACAGGA TCATCAAGAG GATTTGGCAG GATTTGGACA GAAGCAGCGC TTGAGCGGGG CGATAAAGTA GCCGCTACTG CACGTAAATT ATCCGCGATA GCAGATCTTA AAGAAAAATA CGGCGATAAT GTGCTGACGC TTGAGCTCGA CGTGACACAG CCAGAGCAGG TGAAAAGTGT TGTAGAGCAG GCACACGCTC ATTTCGGCAG ACTGGATGTC GTACTAAACA ATGCGGGTTA TTCACTGGTA GGCACCATTG AAGAGAGCTC TGCTGATGAT GTACGGGCCT TGTACGAAAC GAATATAATC GGTCCGATGG CAGTTATCAA GGCAGCCCTG CCCCTGCTGA GAAAACAGGG TGGTGGACAT ATACTGGGTA CTTCCAGCGG TCTTGGCCAT TTTACTTTGC CGGTGATCGG CTATTACTGC TCCTCCAAAT GGGCGTTTGA ATCAATTCAC GAAGCCCTGG CCGCTGAGGT GAAAGCATTT GGTATCAAGG TAACGATCGT AGAGCCAGGT GCATACGCAA CGGAGTTCGG TAGCCAGGAG TCTTTGAAAT TTGCCCCCGG ACTGGATATC TATAACGACT TCAAACAACA GTTCGTACAG AAACTTTCCC AACAGGAAAG AGGCAATCCG GCCGCTACGC CGGCTGCGCT CTTCAAAGTG GTAGACTCGG ATAATCCACC ATTGCGCTTT AACCTGGGTA GCCATAATTT ACCGGCAGTC CGCGTTGCTT ATGCAGAACG TCTGGCAGAA TGGGAAGCCT GGAATGACAT CTCTGTTTCC GCACAGGGTT AA
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Protein sequence | MGSKIWFITG SSRGFGRIWT EAALERGDKV AATARKLSAI ADLKEKYGDN VLTLELDVTQ PEQVKSVVEQ AHAHFGRLDV VLNNAGYSLV GTIEESSADD VRALYETNII GPMAVIKAAL PLLRKQGGGH ILGTSSGLGH FTLPVIGYYC SSKWAFESIH EALAAEVKAF GIKVTIVEPG AYATEFGSQE SLKFAPGLDI YNDFKQQFVQ KLSQQERGNP AATPAALFKV VDSDNPPLRF NLGSHNLPAV RVAYAERLAE WEAWNDISVS AQG
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